Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02527 ATGGTTGAAAAGGAAGACTTGGCTTTAAGTCTAAGCTTGAACTTCTTCCACAAACCTCACCCTCTCAACCTCATCTCTTCCTCAGTTCGAGGAATCGACGTGAATCGCTTACCATCCACCGTTACCGAACACGAAGAAGAAGAAACAGGAGTTTCATCTCCCAACAGCACAGTCTCAAGCGTCAGCGGAAAACGAAGCGAGAGAGAAGATCATGACGTGGACAATAGAGGAAATATCAGCGATGATGAAGACGCTGAAACCGCTAGAAAAAAACTTAGACTCTCCAAAAACCAATCCGCTATTCTTGAAGAAACTTTCAAAGAACACAGTACCCTTAATCCCAAGCAAAAGTTGGCACTTGCTAAACAACTTGGCCTTCGTCCAAGACAAGTTGAAGTCTGGTTTCAAAATAGAAGAGCTAGGACAAAGCTGAAGCAAACGGAGGTTGATTGTGAAGTATTGAAAAGGTGTTGTGAAAATCTAACGGATGAAAATAGAAGACTACACAAGGAACTTCAAGAGCTAAGAGCACTGAAACTTTCCCCTCAATTCTATATGCAAATGACTCCACCGACTACTCTTACCATGTGCCCTTCTTGTGAGCGTGTGGCTGTTCCATCCACTGGTGTTGATGCGATCGCTCAGGCCCATCATCGGGCCGTACACATGGGCCCGTGGGCTTCTGCGGCTACTCCTGCGCATAGGATGTTTGATGTTTTTCGTCAATGA 729 0.4513 MVEKEDLALSLSLNFFHKPHPLNLISSSVRGIDVNRLPSTVTEHEEEETGVSSPNSTVSSVSGKRSEREDHDVDNRGNISDDEDAETARKKLRLSKNQSAILEETFKEHSTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTDENRRLHKELQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSTGVDAIAQAHHRAVHMGPWASAATPAHRMFDVFRQ 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02527 242 Coils Coil 144 178 - -
Vivi1g02527 242 MobiDBLite consensus disorder prediction 40 90 - -
Vivi1g02527 242 Gene3D - 93 143 - -
Vivi1g02527 242 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 26 208 - -
Vivi1g02527 242 CDD homeodomain 89 146 IPR001356 GO:0003677
Vivi1g02527 242 SMART halz 145 188 IPR003106 GO:0006355|GO:0043565
Vivi1g02527 242 Pfam HD-ZIP protein N terminus 27 69 IPR006712 GO:0005634
Vivi1g02527 242 FunFam Homeobox-leucine zipper protein 18 73 150 - -
Vivi1g02527 242 SMART HOX_1 87 149 IPR001356 GO:0003677
Vivi1g02527 242 MobiDBLite consensus disorder prediction 63 90 - -
Vivi1g02527 242 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Vivi1g02527 242 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677
Vivi1g02527 242 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677
Vivi1g02527 242 Pfam Homeobox associated leucine zipper 145 179 IPR003106 GO:0006355|GO:0043565
Vivi1g02527 242 Pfam Homeodomain 89 143 IPR001356 GO:0003677
Vivi1g02527 242 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Vivi1g02527 242 SUPERFAMILY Homeodomain-like 80 146 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02527 Vivi-Chr1 53151588 53153284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02527 1 241 Homeobox Transcription Factor Family AT4G16780 59.859 2.09e-98 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi1g02527 Homeodomain 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02527 K09338 - gmx:100813367 324.709