Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02519 ATGGCACCCTGCAGAAAAAAAGATGGACCAACTAAGAAAACAATGAATAGAGGAGCATGGACCCCGGAGGAAGATCAAAAGCTAGCTCATTGCATTCAAACTCATGGTGCCAAGAAATGGAAAACTGTTTCGGCCAAATCAGGTTTGAATAGGTGTGGAAAGAGTTGTAGGTTAAGATGGCTGAACTATCTTAGACCCAATATCAAGAGAGGGAACATTTCAGATGATGAAGAGGATTTGATTCTTAGGCTTCACAAACTTCTAGGAAACAGGTGGTCTTTGATAGCTGGGAGGCTTCCGGGACGAACTGACAATGAAATTAAGAACTATTGGAATTCTCATTTGTGCAAAAAAGCCACTCACATTGAGGAAAAACCAGAAACTTCCACAACACAAGAAACTATAATTCAAGACAATATTTTTGGGGATAGTGTTGTATTAGAGAATAAAGATTCAATTAATGGAAGTGTTGATTCTGATGTTCTCTTTGATGTGAATGAATTCTTAGACTTTTCCATTGATGAACCATATGAGTTTGATTGGGTGAATAAACTCTTGGAATTTGAGCAGATTCAGTTGCCTGAGAACACAAATATCTGA 600 0.38 MAPCRKKDGPTKKTMNRGAWTPEEDQKLAHCIQTHGAKKWKTVSAKSGLNRCGKSCRLRWLNYLRPNIKRGNISDDEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKATHIEEKPETSTTQETIIQDNIFGDSVVLENKDSINGSVDSDVLFDVNEFLDFSIDEPYEFDWVNKLLEFEQIQLPENTNI 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02519 199 CDD SANT 74 115 IPR001005 -
Vivi1g02519 199 MobiDBLite consensus disorder prediction 1 20 - -
Vivi1g02519 199 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Vivi1g02519 199 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Vivi1g02519 199 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Vivi1g02519 199 Gene3D - 10 70 - -
Vivi1g02519 199 Gene3D - 74 139 - -
Vivi1g02519 199 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Vivi1g02519 199 CDD SANT 19 64 IPR001005 -
Vivi1g02519 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Vivi1g02519 199 FunFam Transcription factor TT2 73 140 - -
Vivi1g02519 199 FunFam MYB-related transcription factor 16 69 - -
Vivi1g02519 199 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Vivi1g02519 199 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 3 126 - -
Vivi1g02519 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Vivi1g02519 199 SMART sant 69 117 IPR001005 -
Vivi1g02519 199 SMART sant 16 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02519 Vivi-Chr1 52946896 52948056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02519 3 128 MYB Transcription Factor Family AT3G13540 62.500 2.25e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1g02519 Myb_DNA-binding 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02519 K09422 - gmx:100799575 270.011