Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02508 ATGCATATTGATATGTTTCTTCATGAATGTGAGTGCTACCTATCAACAAGGGAGAAAATTGTGATCTCCAAAGCATATCCTTTCATAACATTTTTAGGAGATATAATTCCTCCAACAATTATATGGAGTGATTCTTCAAGTACCATAGGAAATGATGGACAAAAGTTGGAAACTTTTAATAGTGCAACTGTTGCAGTGAGTGCGGATTATTTTATAGCCATCAACCTTAAATTTGAGAATACGGCATCATATTTTAAGTCAGAGATAGAATCGGCAGTTGCACTTCGCATTTCTGGAAACAAAGCCGCATTTTACAATTGCACATTTAGTGGAATTCAAGATACTCTATATGATCACAAAGCTCTCAATAGCATTCCACCACAAAATACTAGAAGAGTTATTTTATCCATTGCAACGGGATGTTTCAGGGAGAAAAGTGTCATCTCCAAAGCATATCCTTTCATAACATTTTTAGGAGATTTAATTCCTCCAACAATTATATGGAATGATTCTTCAAGTACCATAGTAAATGATGGACAAAAGTTGGAAACTTTTAATAGTGCAACTGTTGCAGTGAGTGCGGATTATTTCATAGCAATCAACCTTAAATTTGAGAATACGGCATCATATTTTAAGTCAGAGATAGAACCGGCAGTTGCACTTCGCATTTCTGGAAACAAAGCCGCATTTTACAATTGCACGTTTAGTGGACTTCAAGATACTCTATATGATCACAAAGGTATCCACTACTTCAATAATTGCTATATTCAGGGCTCCGTTGATTTTATCTTTGGCTCTGGAAGGTCTCTCTATGAGGTCTGCATTCTAAATTCCATAGCCAACAAAGTGACCGCAATCACAGCTCAGAAACGTTCAATTTCGTCTTTAGATAGCGGAATTTCATTTAAAAATAGCATCGTAAAAGGCAGTGGCCGAGCTTATCTAGGGAGACCATGGGGAGAATACTCGAGGGTTATCTTTTCTAACACCTTCATGGATAATCTTGTTCTCCCTAAAGGATAG 1023 0.3675 MHIDMFLHECECYLSTREKIVISKAYPFITFLGDIIPPTIIWSDSSSTIGNDGQKLETFNSATVAVSADYFIAINLKFENTASYFKSEIESAVALRISGNKAAFYNCTFSGIQDTLYDHKALNSIPPQNTRRVILSIATGCFREKSVISKAYPFITFLGDLIPPTIIWNDSSSTIVNDGQKLETFNSATVAVSADYFIAINLKFENTASYFKSEIEPAVALRISGNKAAFYNCTFSGLQDTLYDHKGIHYFNNCYIQGSVDFIFGSGRSLYEVCILNSIANKVTAITAQKRSISSLDSGISFKNSIVKGSGRAYLGRPWGEYSRVIFSNTFMDNLVLPKG 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02508 340 ProSitePatterns Pectinesterase signature 2. 256 265 IPR033131 -
Vivi1g02508 340 SUPERFAMILY Pectin lyase-like 17 120 IPR011050 -
Vivi1g02508 340 Gene3D - 121 340 IPR012334 -
Vivi1g02508 340 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 17 120 - -
Vivi1g02508 340 Gene3D - 17 120 IPR012334 -
Vivi1g02508 340 SUPERFAMILY Pectin lyase-like 120 338 IPR011050 -
Vivi1g02508 340 Pfam Pectinesterase 120 340 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02508 Vivi-Chr1 52591090 52594933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02508 110 340 Carbohydrate Esterase AT5G55590 42.128 1.93e-60 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02508 K01051 - cit:102614801 298.516