LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g02485	ATGAGTTCAGGGTCCTCGCAGCGCATGTTCCAGCTCAAGCTCGACCCTTTAACCGGTAACTATGAATGGGTCATCATCGAGGAAGAAGACGGTGACGAACCAACCTTCCACCAACCTCTTCTCGCCACCACGTCGTATTTGGACATGCTCAACGATTCCACCAGAAACACTGCATTTCGCCAAGCCATTGAAAAAACCATCACCAAACCCTGTCATGTTCTCGATATTGGTGCTGGAACTGGGTTGCTTTCGATGATGGCTTCGCGAGCTATGGGTGGGAAAGGAACGGTAACAGCTTGCGAGTCCTATCTTCCTATGGTGAAGTTGATGAAGAAGGTTATGCGCCTTAATGGGATAGAAGGGAGAATCAAAGTTATCAACAAGCGTTCTGATGAACTCACTGTTGGTCTTGATATATCTTCACGCGCTGATGTTCTTGTGAGCGAGATATTAGATTCAGAATTATTGGGTGAGGGGCTTATACCAACCCTACAACATGCACATGACAATTTGTTGGTGGAAAACCCTCTGACTGTACCTTATCGAGCAACTACATATGGACAGCTAGTTGAAAGCACGTATTTATGGCGATTGCATGATTTGAATAGCAATGAAGCTAGTTCGTATGATGGCGTTCAACTTGCTCTTCCTGGACTTGAAAGTGTTTTAAGTGTAAAAGTAAAACGTCAGCAATATGCCATGCATTGTGATTCAATAGGAGAAGAACTGAAACCGCTTTCAGAACCCTTCAAAATTTTTGAATTTGATTTTTGGAAACGGCCAGAGAGTTATGGAAAAACCGAGCTGCGCGTAAAGGCAACTGATGATGGCAAAGTTCATGCTGTTGTCTCTTGGTGGGAACTTCAACTTGATCGGGAAGGGACGATTTATTATTCTACTGCTCCTGGGTGGATAAGATCAACTACAGCTACAAGTCCTGTTGATTGGTGTGACCACTGGAAGCAGTGTGTTTGGTTTGTTCCGGGAAGCGGTATATCAGTATTCAGAGGAGAAGAAGTTCATTTACATGCTACTCATGATGATACCAGTATCTCATATGATTTAGATACCCTAGTGTCAAGATCTGAGGTTTTGCAGCATGGATTAACGCCTGGAGATTTTCAGCTTGTAATTCCGCCAGAAAGAGCTGCAATCTATGGAGACAAAGGATGGAGGCTTTCAATGTTGAAAGCAGTAGAGAATGTGTTGCAGGGAAGAAGTCGCTCATTATGCCTGGTAGCAGATGACAGTGTGTATTTACCTCTTCTCGTGGCAAAGCTTTCAGAAGCACCACATGTAATATCATCTTTTCCGGGGCTTAAGGAAAGGGGACTCCAATATTTGCAAGCTGCTGCCCGTGCAAATAACCTGTCACCTAATTGCATAAAAGCTGTTGAAAAAGGGTTTAAAAAGTTAGCCATGCATGATACAAACCAGAAAAAGGTTGACCTGTTAATAGCAGAACCTTTCTATTTCGGACAAGATGGCATGCTACCGTGGCAGAACCTGCGGTTTTGGAAGGATCGTACAACACTCGATTATATCCTCTCCGAAGATGCTATGATAGTTCCCAATAAGGGAATTTTGAGGGCTTGTGCCATCTATCTTCCTGATCTTTGGAAAAGTCGTTGCTGCTTGAGTAAGATAGAAGGTTTTGACCATTCTGTGGTAAATGCTACACTAGGAGCGTGCGGTCAGCTACCTGAATTGGAAGAGGGTCCTTGTCTACCTTTTTTCCTTTGGCAGTGTGGAGAATTTGATGTGCTTAGTGAAACATTTGATGTGATGGAGTTTGATTTCACAAAACGAATAGGCCAATGTCAAGGAAAATCCCAGGTTAAATTCACTAAGACTGGAGTATGTCATGGGTTTGTGTTGTGGATTGACTGGGTGATGGATTCGCAGAGTTCTGTTGTCATATCAACCGGTCCAGATAAAAGATATTGGAAACAGGGAATAAAGCTTCTTGCAACACCTAGAACTGTAGGACCCCAAGGATTGACAAATCCCCAAGCATGTTGTTCTGCAGCTCTTGAAGCATTTTTTGATCCATCCAATGGGGAACTCCAAATTATACATGATTTCTTATGA	2091	0.4323	MSSGSSQRMFQLKLDPLTGNYEWVIIEEEDGDEPTFHQPLLATTSYLDMLNDSTRNTAFRQAIEKTITKPCHVLDIGAGTGLLSMMASRAMGGKGTVTACESYLPMVKLMKKVMRLNGIEGRIKVINKRSDELTVGLDISSRADVLVSEILDSELLGEGLIPTLQHAHDNLLVENPLTVPYRATTYGQLVESTYLWRLHDLNSNEASSYDGVQLALPGLESVLSVKVKRQQYAMHCDSIGEELKPLSEPFKIFEFDFWKRPESYGKTELRVKATDDGKVHAVVSWWELQLDREGTIYYSTAPGWIRSTTATSPVDWCDHWKQCVWFVPGSGISVFRGEEVHLHATHDDTSISYDLDTLVSRSEVLQHGLTPGDFQLVIPPERAAIYGDKGWRLSMLKAVENVLQGRSRSLCLVADDSVYLPLLVAKLSEAPHVISSFPGLKERGLQYLQAAARANNLSPNCIKAVEKGFKKLAMHDTNQKKVDLLIAEPFYFGQDGMLPWQNLRFWKDRTTLDYILSEDAMIVPNKGILRACAIYLPDLWKSRCCLSKIEGFDHSVVNATLGACGQLPELEEGPCLPFFLWQCGEFDVLSETFDVMEFDFTKRIGQCQGKSQVKFTKTGVCHGFVLWIDWVMDSQSSVVISTGPDKRYWKQGIKLLATPRTVGPQGLTNPQACCSAALEAFFDPSNGELQIIHDFL	696

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g02485	696	ProSiteProfiles	SAM-dependent methyltransferase PRMT-type domain profile.	28	352	IPR025799	GO:0016274\|GO:0018216
	Vivi1g02485	696	FunFam	Protein arginine N-methyltransferase 1.6	182	368	-	-
	Vivi1g02485	696	FunFam	Protein arginine N-methyltransferase 1.6	528	695	-	-
	Vivi1g02485	696	Gene3D	-	528	695	-	-
	Vivi1g02485	696	Gene3D	Vaccinia Virus protein VP39	375	524	IPR029063	-
	Vivi1g02485	696	FunFam	Protein arginine N-methyltransferase 7	374	524	-	-
	Vivi1g02485	696	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	46	349	IPR029063	-
	Vivi1g02485	696	Gene3D	-	182	367	-	-
	Vivi1g02485	696	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	445	664	IPR029063	-
	Vivi1g02485	696	Pfam	Ribosomal protein L11 methyltransferase (PrmA)	61	153	-	-
	Vivi1g02485	696	ProSiteProfiles	SAM-dependent methyltransferase PRMT-type domain profile.	358	696	IPR025799	GO:0016274\|GO:0018216
	Vivi1g02485	696	PANTHER	PROTEIN ARGININE N-METHYLTRANSFERASE	447	666	IPR025799	GO:0016274\|GO:0018216
	Vivi1g02485	696	FunFam	Protein arginine N-methyltransferase	39	181	-	-
	Vivi1g02485	696	Gene3D	Vaccinia Virus protein VP39	39	181	IPR029063	-
	Vivi1g02485	696	PIRSF	Arg_N-mtase	7	694	IPR014644	GO:0006479\|GO:0008168

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g02485	Vivi-Chr1	52307517	52312731	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g02485	46	186	C2H2 Transcription Factor Family	AT3G12270	31.333	4.19e-11	64.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g02485	K11438		-	gmx:100785846	1150.96