Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02447 ATGGATTTGAAGCCTTCTCATGCTTCTCCAATTCGTAGCGATCCTGTTCCTACCAACAAGTCAAGGCTTGGAATCCATTCTAGTTTGTTAGCTTGTTCACAGCAAGATTCACCACCACTCTCTCCAGGGAAGTACTCGAAATCCAATTCAAAGAAAAATATGGGAAGTCTTGATGATGTTAGGTCTAACGGTTGGTTGGATGCAATGAAAGCATCTTCACCTCCAAGGAAAAAGTCTATACTTAAAGGTTCGAGTGCTCAAGTTGCTTCATTTGACTACGACGTTGAGGATTATAATTTATGGATGCAAGGATATCCTTCAGCACTAGAAGCTTTTGAGAAAATCATCGACTGTGCAAAGGATAAGAAGATTGCAATGTTTCTTGATTATGATGGCACACTTTCACCTATAGTAGAGGATCCAGATAGTGCTTTCATGTCTGAACCTATGCGAAAAACTGTGAGAAAAGTGGCAAAGTATTTCCCAACAGCAATCATTAGTGGAAGAAGTCGTGATAAGGTTTTTGATTTAGTTAAACTAACAGAACTCTACTACGCCGGTAGTCATGGGATGGACATTATTGGCCCTGTTAGTGACACTCTGTCCATAAACCATCCAAATTGTGTTAAGTCTACTGACCATGAGGGAAAGGAGATAACTCTCTTTCAGCCGGCAAGAGAATTCCTTCCTATGATCGATGAGGTTTTTAAAACCCTCATTGAGATTACTAAAGATATTGAAGGCGCAAAAGTTGAAAATCACAAGTTTTGCGCTTCTGTACATTACCGTAACGTAGAAGAGAATAATTGGACAATGATCGGGCAACGTGTCCATGATATGTTAAAAAATTACCCTCGTTTACGTTCAACTCATGGACGGAAGGTTTTAGAAATTCGTCCTGTAATTGACTGGAACAAAGGAAAAGCTGTTGAATTTTTACTTGAATCACTAGGCTTAACTGATAGAAATGATGTACTTCCCATATACATTGGAGATGATAAAACTGATGAAGATGCATTTAAGGTACTGAGGGAGAGCAATATAGGTTATGGGATATTGGTTTCATCAGTGGGAAAAGAAAGCAATGCTTTTTACTCTCTCAGAGACACCAATGAGGTTATGAAATTTCTCCAACTCTTGGTGAATTGGAAGAGGGAGGAAGAAAGAGAGCATGGGAAGAAATAA 1185 0.3907 MDLKPSHASPIRSDPVPTNKSRLGIHSSLLACSQQDSPPLSPGKYSKSNSKKNMGSLDDVRSNGWLDAMKASSPPRKKSILKGSSAQVASFDYDVEDYNLWMQGYPSALEAFEKIIDCAKDKKIAMFLDYDGTLSPIVEDPDSAFMSEPMRKTVRKVAKYFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPVSDTLSINHPNCVKSTDHEGKEITLFQPAREFLPMIDEVFKTLIEITKDIEGAKVENHKFCASVHYRNVEENNWTMIGQRVHDMLKNYPRLRSTHGRKVLEIRPVIDWNKGKAVEFLLESLGLTDRNDVLPIYIGDDKTDEDAFKVLRESNIGYGILVSSVGKESNAFYSLRDTNEVMKFLQLLVNWKREEEREHGKK 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02447 394 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 44 391 IPR044651 GO:0004805|GO:0005992
Vivi1g02447 394 NCBIfam HAD-IIB family hydrolase 126 345 IPR006379 -
Vivi1g02447 394 Pfam Trehalose-phosphatase 127 370 IPR003337 GO:0003824|GO:0005992
Vivi1g02447 394 MobiDBLite consensus disorder prediction 12 57 - -
Vivi1g02447 394 FunFam Trehalose 6-phosphate phosphatase 231 390 - -
Vivi1g02447 394 MobiDBLite consensus disorder prediction 1 61 - -
Vivi1g02447 394 SUPERFAMILY HAD-like 125 384 IPR036412 -
Vivi1g02447 394 Gene3D - 124 212 IPR023214 -
Vivi1g02447 394 Gene3D - 224 394 IPR023214 -
Vivi1g02447 394 CDD HAD_TPP 125 375 - -
Vivi1g02447 394 NCBIfam trehalose-phosphatase 122 381 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02447 Vivi-Chr1 51507160 51511942 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02447 120 380 Trehalose Biosynthesis Gene Families AT1G70290 26.882 4.03e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02447 K01087 - qsa:O6P43_024315 573.933