Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02442 ATGTCCTCCTCTTCTTTATCCTTGGACCACCTCCCTCCTTCCGAGCAACTTTGTTATGTTCACTGCAACATTTGTGACACCATCCTTGCTGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACTGTTACTGTCAGATGTGGTCACTGCACTAATCTTCTCCCTGTTAACATGCGTGCACTGCTTCTTCCATCTCCTAACCAGTTTCATTTTGGACACTCTTTCTTCTCCCCAACTCATAACCTTCTGGAGGAGATGCCAAACCAAGTTCCTAATTTCATGATGAACCTCACAAACACACCAAATGAGTTCTCTATGCCTCCTAGGACTGTTGCTGATGAGCTTCCAAGGCCTCCTATCATAAACAGACAAAAGAGACAGAGAGTTCCTTCAGCATACAACCGCTTCATCAAAGATGAGATCCAACGCATTAAGTCTGTCAATCCTGATATTACTCACAGGGAAGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGGAGATGGTGGTCAGGCTCTGATGAAAGATGGCTTTTATGCTTCTGCTAATCTCGGTGTTTCGCCATACTAA 639 0.4538 MSSSSLSLDHLPPSEQLCYVHCNICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHFGHSFFSPTHNLLEEMPNQVPNFMMNLTNTPNEFSMPPRTVADELPRPPIINRQKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVCQQEGGDGGQALMKDGFYASANLGVSPY 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02442 212 CDD HMG-box_SF 127 163 - -
Vivi1g02442 212 Gene3D High mobility group box domain 120 169 IPR036910 -
Vivi1g02442 212 Pfam YABBY protein 13 173 IPR006780 GO:0007275
Vivi1g02442 212 PANTHER PROTEIN YABBY 6-RELATED 1 183 IPR006780 GO:0007275
Vivi1g02442 212 SUPERFAMILY HMG-box 118 166 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02442 Vivi-Chr1 51344783 51347013 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02442 24 210 C2C2-YABBY Transcription Factor Family AT4G00180 56.398 9.54e-62 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vivi1g02442 YABBY 2.3e-66 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02442 K25796 - gmx:100798441 376.711