Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02441 ATGTCCTCCTCTTCTTTATCCTTGGACCACCTCCCTCCTTCCGAGCAACTTTGTTATGTTCACTGCAACATTTGTGACACCATCCTTGCTGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACTGTTACTGTCAGATGTGGTCACTGCACTAATCTTCTCCCTGTTAACATGCGTGCACTGCTTCTTCCATCTCCTAACCAGTTTCATTTTGGACACTCTTTCTTCTCCCCAACTCATAACCTTCTGGAGGAGATGCCAAACCAAGTTCCTAATTTCATGATGAACCTCACAAACACACCAAATGAGTTCTCTATGCCTCCTAGGACTGTTGCTGATGAGCTTCCAAGGCCTCCTATCATAAACAGACCTCCAGAAAAGAGACAGAGAGTTCCTTCAGCATACAACCGCTTCATCAAAGATGAGATCCAACGCATTAAGTCTGTCAATCCTGATATTACTCACAGGGAAGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGGAGATGGTGGTCAGGCTCTGATGAAAGATGGCTTTTATGCTTCTGCTAATCTCGGTGTTTCGCCATACTAA 645 0.4558 MSSSSLSLDHLPPSEQLCYVHCNICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHFGHSFFSPTHNLLEEMPNQVPNFMMNLTNTPNEFSMPPRTVADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVCQQEGGDGGQALMKDGFYASANLGVSPY 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02441 214 CDD HMG-box_SF 129 165 - -
Vivi1g02441 214 Pfam YABBY protein 13 175 IPR006780 GO:0007275
Vivi1g02441 214 SUPERFAMILY HMG-box 119 168 IPR036910 -
Vivi1g02441 214 Gene3D High mobility group box domain 120 171 IPR036910 -
Vivi1g02441 214 FunFam Axial regulator YABBY 120 191 - -
Vivi1g02441 214 PANTHER PROTEIN YABBY 6-RELATED 1 185 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02441 Vivi-Chr1 51344783 51347013 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02441 24 212 C2C2-YABBY Transcription Factor Family AT4G00180 59.716 5.07e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vivi1g02441 YABBY 1.6e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02441 K25796 - gmx:100798441 388.267