Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02440 ATGTCCTCCTCTTCTTTATCCTTGGACCACCTCCCTCCTTCCGAGCAACTTTGTTATGTTCACTGCAACATTTGTGACACCATCCTTGCTGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACTGTTACTGTCAGATGTGGTCACTGCACTAATCTTCTCCCTGTTAACATGCGTGCACTGCTTCTTCCATCTCCTAACCAGTTTCATTTTGGACACTCTTTCTTCTCCCCAACTCATAACCTTCTGCAGGAGGAGATGCCAAACCAAGTTCCTAATTTCATGATGAACCTCACAAACACACCAAATGAGTTCTCTATGCCTCCTAGGACTGTTGCTGATGAGCTTCCAAGGCCTCCTATCATAAACAGACAAAAGAGACAGAGAGTTCCTTCAGCATACAACCGCTTCATCAAAGATGAGATCCAACGCATTAAGTCTGTCAATCCTGATATTACTCACAGGGAAGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGGAGATGGTGGTCAGGCTCTGATGAAAGATGGCTTTTATGCTTCTGCTAATCTCGGTGTTTCGCCATACTAA 642 0.4548 MSSSSLSLDHLPPSEQLCYVHCNICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHFGHSFFSPTHNLLQEEMPNQVPNFMMNLTNTPNEFSMPPRTVADELPRPPIINRQKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVCQQEGGDGGQALMKDGFYASANLGVSPY 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02440 213 CDD HMG-box_SF 128 164 - -
Vivi1g02440 213 Gene3D High mobility group box domain 121 170 IPR036910 -
Vivi1g02440 213 Pfam YABBY protein 13 174 IPR006780 GO:0007275
Vivi1g02440 213 PANTHER PROTEIN YABBY 6-RELATED 1 184 IPR006780 GO:0007275
Vivi1g02440 213 SUPERFAMILY HMG-box 119 167 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02440 Vivi-Chr1 51344783 51347013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02440 24 211 C2C2-YABBY Transcription Factor Family AT4G00180 56.132 6.99e-60 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vivi1g02440 YABBY 8.8e-67 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02440 K25796 - gmx:100798441 372.089