Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02439 ATGTCCTCCTCTTCTTTATCCTTGGACCACCTCCCTCCTTCCGAGCAACTTTGTTATGTTCACTGCAACATTTGTGACACCATCCTTGCTGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACTGTTACTGTCAGATGTGGTCACTGCACTAATCTTCTCCCTGTTAACATGCGTGCACTGCTTCTTCCATCTCCTAACCAGTTTCATTTTGGACACTCTTTCTTCTCCCCAACTCATAACCTTCTGCAGGAGGAGATGCCAAACCAAGTTCCTAATTTCATGATGAACCTCACAAACACACCAAATGAGTTCTCTATGCCTCCTAGGACTGTTGCTGATGAGCTTCCAAGGCCTCCTATCATAAACAGACCTCCAGAAAAGAGACAGAGAGTTCCTTCAGCATACAACCGCTTCATCAAAGATGAGATCCAACGCATTAAGTCTGTCAATCCTGATATTACTCACAGGGAAGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGGAGATGGTGGTCAGGCTCTGATGAAAGATGGCTTTTATGCTTCTGCTAATCTCGGTGTTTCGCCATACTAA 648 0.4568 MSSSSLSLDHLPPSEQLCYVHCNICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHFGHSFFSPTHNLLQEEMPNQVPNFMMNLTNTPNEFSMPPRTVADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVCQQEGGDGGQALMKDGFYASANLGVSPY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02439 215 Pfam YABBY protein 13 176 IPR006780 GO:0007275
Vivi1g02439 215 CDD HMG-box_SF 130 166 - -
Vivi1g02439 215 SUPERFAMILY HMG-box 120 169 IPR036910 -
Vivi1g02439 215 Gene3D High mobility group box domain 121 172 IPR036910 -
Vivi1g02439 215 PANTHER PROTEIN YABBY 6-RELATED 1 186 IPR006780 GO:0007275
Vivi1g02439 215 FunFam Axial regulator YABBY 121 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02439 Vivi-Chr1 51344783 51347013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02439 24 213 C2C2-YABBY Transcription Factor Family AT4G00180 59.434 2.74e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vivi1g02439 YABBY 6e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02439 K25796 - gmx:100798441 383.645