Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02436 ATGAACACATTTTCACATGTACCTCCCGGTTTTCGTTTTCATCCAACGGATGAAGAACTTGTTGATTATTATCTCAGGAAGAAGGTATCGTCAAAAAAGATCGATCTAGATGTTATCAAAGACGTCGATCTTTATAAAATCGAACCGTGGGATCTTCAAGAGTTATGCAAAATAGGAAGTGATGAACAAAATGATTGGTATTTCTTTAGTCATAAAGATAAGAAGTATCCGACCGGAACTCGAACAAATAGAGCAACAAAAGCAGGATTCTGGAAAGCCACGGGAAGAGATAAGGCAATATATGCAAAACAATTCCTAGTTGGAATGAGAAAGACTCTTGTGTTTTACAAAGGACGTGCCCCAAATGGACAGAAATCTGATTGGATCATGCATGAGTATCGTCTTGAAACTAATCAAAATGGAACTTCTCAGGAAGAAGGTTGGGTTGTTTGCAGGGTATTCAAGAAGAGAATGACAACAGTACAGAAAATGAGTGAGTATGATCAATCACCATGCAACTGGTACGATGATCAAGTTTCCTTCATGCCAGATCTTGAATCTCCAACCAGAACCAACTCTCACCCAAACTACACTTCATCATACCAATCATGCAAACCAGAACTTGAATTAATGCAATACAACATCATACCAAACCATCAATACCATGATCTTCCACATCTTCAAAGCCCTAAAATCACTCCATCAGTTATCACCCCTTATGCTCATGCAAACAATAACAATATTGCACTCACTCAACAACAGCAGCAACAACAGATGCAGTATTTGCAGTACCATCAACAGAATCTTCACTCGATCTACGGCGGAAACAGCAGCGCTGGGAATGTTAATGATGAACAAGTCACTGATTGGAGAGTTCTTGACAAATTTGTTGCTTCTCAGCTTAGTCAAGAAGATAATAATAATAATAACAATAATAATAATCAAGAACATGTTTCTGATAAACAAGCTAGTTCTTTCTCGAATGCAGCTATACTTCAAGTTGCTGAACAAATTACTCTTCTTGCTAATGAGTCCAAAAAGAATGAAGTTTCTGAGGAACATGCTTCAACTTCTACCTCCAGTTGCCACATGGAACTCTGGAAGTGA 1107 0.3812 MNTFSHVPPGFRFHPTDEELVDYYLRKKVSSKKIDLDVIKDVDLYKIEPWDLQELCKIGSDEQNDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYAKQFLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNQNGTSQEEGWVVCRVFKKRMTTVQKMSEYDQSPCNWYDDQVSFMPDLESPTRTNSHPNYTSSYQSCKPELELMQYNIIPNHQYHDLPHLQSPKITPSVITPYAHANNNNIALTQQQQQQQMQYLQYHQQNLHSIYGGNSSAGNVNDEQVTDWRVLDKFVASQLSQEDNNNNNNNNNQEHVSDKQASSFSNAAILQVAEQITLLANESKKNEVSEEHASTSTSSCHMELWK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02436 368 MobiDBLite consensus disorder prediction 302 324 - -
Vivi1g02436 368 FunFam NAC domain-containing protein 16 160 - -
Vivi1g02436 368 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Vivi1g02436 368 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 303 - -
Vivi1g02436 368 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Vivi1g02436 368 MobiDBLite consensus disorder prediction 354 368 - -
Vivi1g02436 368 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Vivi1g02436 368 MobiDBLite consensus disorder prediction 345 368 - -
Vivi1g02436 368 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02436 Vivi-Chr1 51198814 51202099 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02436 1 368 NAC Transcription Factor Family AT1G12260 57.027 1.34e-137 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1g02436 NAM 1.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02436 - - gmx:100797916 492.656