Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02431 ATGGCAGAGTCATTTCAAGTGGCCACTTCCTCTCTATGTAACCTCAACGGTTCTCACCGAAGGCCAATTCATCTTTCTCGCGCTGCTTTTCGACCTCAACACTCCCTCTATTTCACTCGCTCTTCCTCTTCACACTTCTTCGGAACTAATGTCAATTCCATTTCTTTCGCTTCACCCCGAATCGCTAGAACAAGGCGAAACTTTTCAGTTTTTGCCATGTCCACTGAAGATTCCAGACGTGCTGTCCCATTGAAGGACTATCGCAACATTGGCATCATGGCTCACATAGACGCTGGAAAAACTACTACGACCGAAAGAATTCTCTTCTACACCGGAAGAAACTACAAAATCGGAGAGGTACATGAAGGAACAGCGACAATGGACTGGATGGAACAGGAACAAGAACGAGGGATTACAATTACTTCTGCTGCAACCACCACTTTTTGGGATAAGCACAGGATCAATATCATTGATACTCCAGGTCATGTTGATTTCACTTTAGAAGTCGAGCGTGCGCTTAGGGTGTTGGATGGAGCTATATGCTTGTTTGACAGTGTTGCTGGTGTGGAGCCGCAGTCGGAAACTGTGTGGAGGCAGGCTGATAGATACGGGGTCCCGAGAATTTGTTTTGTTAATAAAATGGATAGACTAGGAGCGAATTTTTTCAGGACAAGAGATATGATTGTGACGAATCTAGGTGCTAAACCGCTTGTACTTCAACTACCGATTGGAGCGGAGGATACGTTTAAGGGAGTTATTGATATTGTTAGGATGAAGGCTATAGTTTGGGGTGGTGAAGAGCTTGGTGCCAAGTTTGCTTATGAAGATATACCTGAAGATCTCCTAGAGCAGGCTCAGGATTACAGATCACAGATGCTAGAAACTATAGTTGAGTTAGATGACGAGGTCATGGAGAACTATCTAGAAGGAGTTGAACCGGATGAACAAACGATAAAAAGATTAATTAGAAAGGGATCGATAGCAGCCACTTTTGTGCCAGTGTTGTGTGGATCAGCTTTCAAAAACAAGGGAGTCCAACCGTTGCTTGATGCTGTCGTGGACTATCTGCCATCGCCACTTGATGTACCACCAATGAAGGGATCTGACCCTGAAAACCCAGAATTGGCTATAGAAAGGATAGCAAGTGACGATGAAGCATTTTCTGGACTGGCTTTTAAGATCATGAGTGATTCATTTGTAGGCTCCTTGACGTTTGTCAGGGTGTATTCTGGAAAGCTAACCGCAGGGTCTTATGTACTCAATTCAAACAAAGGGAAAAAGGAAAGAATCGGTAGACTTCTAGAAATGCATGCTAACAGCAGAGAGGACGTTAAAGTAGCTTTAACAGGGGATATTGTTGCTCTTGCTGGTTTAAAAGATACTATAACAGGTGAAACTTTGTGTGACCCTGAGAATCCGGTCGTGCTTGAGCGGATGGACTTCCCTGATCCTGTGATTAAGATTGCAATTGAACCCAAAACTAAAGCTGACATTGACAAGATGGCAGCTGGTTTAGTCAAGCTTGCACAGGAAGATCCTTCTTTCCACTTCTCCCGTGATGAAGAGATAAATCAGACTGTCATTGAAGGAATGGGAGAATTGCATCTTGAAATCATTGTCGACCGCCTTAAAAGAGAATACAAGGTAGAAGCTAATGTTGGAGCTCCCCAAGTAAACTACAGGGAAAGCATTTCCAAAGTCATAGAAACGAGGTATGTGCACAAGAAACAATCAGGTGGGCAAGGTCAGTTTGCAGATATAACCGTACGGTTTGAACCCATGGAGCCAGGTAGTGGATATGAATTCAAGAGTGAAATCAAAGGAGGTGCAGTTCCAAAAGAATACGTTCCTGGGGTGGTTAAAGGATTGGAAGAGTGTATGAGCAATGGTGTTCTAGCCGGCTTTCCAGTTGTTGATGTTCGCGCAGTACTTGTGGATGGTACTTACCACGATGTGGATTCAAGTGTGTTGGCTTTCCAGTTGGCAGCGAGAGGAGCTTTTCGAGAAGGAATGAGAAAAGCCGGACCAAAAATGCTTGAACCTATAATGAAAGTTGAAGTTGTTACTCCTGAAGAACATTTAGGAGATGTAATTGGTGATCTCAACTCAAGAAGAGGTCAGATCAACAGTTTTGGTGACAAACCAGGTGGACTTAAGGTGGTTGATTCTTTAGTACCTCTTGCTGAGATGTTTCAGTATGTCAGCACACTTAGAGGGATGACAAAGGGTCGTGCATCCTATTCAATGCAATTAGCCATGTTTGATGTGGTACCTCAACACATTCAGAATCAACTTGCAACAAAAGGGCAAGAAGTTTCTGCTTAA 2325 0.4361 MAESFQVATSSLCNLNGSHRRPIHLSRAAFRPQHSLYFTRSSSSHFFGTNVNSISFASPRIARTRRNFSVFAMSTEDSRRAVPLKDYRNIGIMAHIDAGKTTTTERILFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWDKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADRYGVPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVLQLPIGAEDTFKGVIDIVRMKAIVWGGEELGAKFAYEDIPEDLLEQAQDYRSQMLETIVELDDEVMENYLEGVEPDEQTIKRLIRKGSIAATFVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPMKGSDPENPELAIERIASDDEAFSGLAFKIMSDSFVGSLTFVRVYSGKLTAGSYVLNSNKGKKERIGRLLEMHANSREDVKVALTGDIVALAGLKDTITGETLCDPENPVVLERMDFPDPVIKIAIEPKTKADIDKMAAGLVKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREYKVEANVGAPQVNYRESISKVIETRYVHKKQSGGQGQFADITVRFEPMEPGSGYEFKSEIKGGAVPKEYVPGVVKGLEECMSNGVLAGFPVVDVRAVLVDGTYHDVDSSVLAFQLAARGAFREGMRKAGPKMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDSLVPLAEMFQYVSTLRGMTKGRASYSMQLAMFDVVPQHIQNQLATKGQEVSA 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02431 774 Pfam Elongation factor G, domain IV 556 674 IPR005517 GO:0005525
Vivi1g02431 774 Coils Coil 282 302 - -
Vivi1g02431 774 CDD EFG_mtEFG_C 680 758 IPR035649 -
Vivi1g02431 774 FunFam Elongation factor G 485 561 - -
Vivi1g02431 774 NCBIfam small GTP-binding protein domain 87 257 IPR005225 GO:0005525
Vivi1g02431 774 Gene3D - 79 368 IPR027417 -
Vivi1g02431 774 Pfam Elongation factor G C-terminus 678 764 IPR000640 -
Vivi1g02431 774 Hamap Elongation factor G, chloroplastic. 77 774 IPR030848 GO:0003746|GO:0006414|GO:0009507
Vivi1g02431 774 PRINTS GTP-binding elongation factor signature 135 143 IPR000795 GO:0003924|GO:0005525
Vivi1g02431 774 PRINTS GTP-binding elongation factor signature 89 102 IPR000795 GO:0003924|GO:0005525
Vivi1g02431 774 PRINTS GTP-binding elongation factor signature 171 182 IPR000795 GO:0003924|GO:0005525
Vivi1g02431 774 PRINTS GTP-binding elongation factor signature 155 165 IPR000795 GO:0003924|GO:0005525
Vivi1g02431 774 PRINTS GTP-binding elongation factor signature 207 216 IPR000795 GO:0003924|GO:0005525
Vivi1g02431 774 Gene3D - 562 765 IPR014721 -
Vivi1g02431 774 SMART EFG_IV_2 557 675 IPR005517 GO:0005525
Vivi1g02431 774 Gene3D - 681 752 - -
Vivi1g02431 774 CDD EFG_mtEFG1_IV 560 675 IPR005517 GO:0005525
Vivi1g02431 774 Hamap Elongation factor G [fusA]. 83 769 IPR004540 GO:0003746|GO:0005525|GO:0006414
Vivi1g02431 774 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 128 143 IPR031157 -
Vivi1g02431 774 FunFam Elongation factor G 681 752 - -
Vivi1g02431 774 Gene3D Elongation Factor G (Translational Gtpase), domain 3 485 561 - -
Vivi1g02431 774 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 358 IPR027417 -
Vivi1g02431 774 FunFam Elongation factor G 369 484 - -
Vivi1g02431 774 FunFam Elongation factor G 562 692 - -
Vivi1g02431 774 Pfam Elongation factor Tu domain 2 401 468 IPR004161 GO:0005525
Vivi1g02431 774 CDD EFG_mtEFG_II 387 469 - -
Vivi1g02431 774 SUPERFAMILY Ribosomal protein S5 domain 2-like 556 676 IPR020568 -
Vivi1g02431 774 Pfam Elongation factor Tu GTP binding domain 86 358 IPR000795 GO:0003924|GO:0005525
Vivi1g02431 774 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 85 360 IPR000795 GO:0003924|GO:0005525
Vivi1g02431 774 CDD EF-G 89 359 - -
Vivi1g02431 774 SUPERFAMILY EF-G C-terminal domain-like 481 558 IPR035647 -
Vivi1g02431 774 Gene3D Translation factors 369 484 - -
Vivi1g02431 774 SMART EFG_C_a 677 765 IPR000640 -
Vivi1g02431 774 FunFam Elongation factor G 78 369 - -
Vivi1g02431 774 Pfam Elongation Factor G, domain III 481 554 IPR041095 -
Vivi1g02431 774 NCBIfam elongation factor G 80 768 IPR004540 GO:0003746|GO:0005525|GO:0006414
Vivi1g02431 774 SUPERFAMILY Translation proteins 341 481 IPR009000 -
Vivi1g02431 774 CDD EFG_III 482 557 IPR009022 -
Vivi1g02431 774 PANTHER TRANSLATION ELONGATION FACTOR G-RELATED 66 768 - -
Vivi1g02431 774 SUPERFAMILY EF-G C-terminal domain-like 680 768 IPR035647 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02431 Vivi-Chr1 51082881 51086335 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02431 74 745 Eukaryotic Initiation Factors Gene Family AT1G56070 24.880 1.36e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02431 K02355 - gmx:102663021 1354.73