Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02420 ATGGCAAAGGGTAGCTCCAGTAACAACTATGAAGAGGCTAGAAAACTAAGATTGGAACAAAACAATAAGAAATTTCAGGATTTAGGGATTTCAATGATTTCAAAACAATTGACTCAAATCGCAAGTTTTTCCAACAAGTCACCGAAACGCTGTCTCAAACAGAAATCAAAGACTAACGATGTATCGGAACAAAGGCGCTCTTCTCGTGCTAGAAACAAAGTTACTTCATACACTGAAGAGTTTAGCACAGATTTTCCACATAAGAGTTCACGTCCACGGAAGAGGTCAAGGTCAAGTCCATCGTCATGGGGAAGTTACATTGCGAGGCCACTAGATGAAATCAAAGAAGCTACAAAACAAGAAAGAGATCGTGCTTATAAGGCTGCAGAGAAACTCGAAAGCAATTTGCAGTCTCCAAATCCATCATTTGTCAAGTCAATGGTCCGGTCTCATGTTTATAGCTGCTTTTGGTTGGGTCTTCCTAGTAGATTTTGTCTGGACCATCTTCCAAAAGAGGGGTGTAACATGATATTAGAGGATGAAGAGGGCTCAGAGTATGCTGCTGTTTACATTGGCCATAGAAGTGGGCTAAGTGGTGGCTGGAGAGCATTTGCGTTGGAACATAAATTGGATGATGGTGATGCACTTGTTTTTGAATTGGTTAAGGCAGACAGATTTAAGATTTATATTGTTAGAGCATTTCCAAATATTGGTGAAAAAGAGGAAGAAGAAAACGATACTTTGGTGGAAGAAGAAACTACGCACACAATCAAAGCAACAAAAAAATCTAAGGCTGCAAGTAACCTTGAATCAGCATCAAAGAAGACTAAAAAGCGAAAACATGCCATTGAAACTAAGGAATCAGAGAATTCTGAAGAAAGTCTGCCAGAAAGTAACATTGACAAAGAATCCAAACCGCAGAGGGTACATTCTAGTAGAAAAACAAAATCTTCTCAGAAAAAAATGCAAAAGATATCTGAAGTACCAAGTACTCCTGAGCAAAAAGAGGAATCACAAATTGAAGTTGCGAAACCAAAGGAAGCTATACAGAAAACTAGATCTTCTCAGAGAAAGCTTCAAAAGATATCTGAAGTATCTACTACTCCTGAGCCAAAAGGGGAGGCACAAGTTAAAACTATGAAACCAAAGGAAGCTACAAAGTTGTCAAGGAAGTCCAAAGAAGGTAACTTGAGCAAGAAGAAAGAACATGTTCAGCATGATGCGATTGAGTCAATGGAAGATGTTAAGGATGATGCAATCGAGTCAACGAAAGATAAGCCAGATGAAAAACCAAGCGAACATGTTTCACAGAAACCTCCAAAAAAACGAGCTGTTAAGTTTTTCAGTAAGAAAACATCAATTTCCAATTTAATCTGCGTGGTTAAAAAGCCTTAG 1395 0.3857 MAKGSSSNNYEEARKLRLEQNNKKFQDLGISMISKQLTQIASFSNKSPKRCLKQKSKTNDVSEQRRSSRARNKVTSYTEEFSTDFPHKSSRPRKRSRSSPSSWGSYIARPLDEIKEATKQERDRAYKAAEKLESNLQSPNPSFVKSMVRSHVYSCFWLGLPSRFCLDHLPKEGCNMILEDEEGSEYAAVYIGHRSGLSGGWRAFALEHKLDDGDALVFELVKADRFKIYIVRAFPNIGEKEEEENDTLVEEETTHTIKATKKSKAASNLESASKKTKKRKHAIETKESENSEESLPESNIDKESKPQRVHSSRKTKSSQKKMQKISEVPSTPEQKEESQIEVAKPKEAIQKTRSSQRKLQKISEVSTTPEPKGEAQVKTMKPKEATKLSRKSKEGNLSKKKEHVQHDAIESMEDVKDDAIESTKDKPDEKPSEHVSQKPPKKRAVKFFSKKTSISNLICVVKKP 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02420 464 MobiDBLite consensus disorder prediction 41 104 - -
Vivi1g02420 464 MobiDBLite consensus disorder prediction 359 373 - -
Vivi1g02420 464 MobiDBLite consensus disorder prediction 241 444 - -
Vivi1g02420 464 CDD B3_DNA 141 232 IPR003340 GO:0003677
Vivi1g02420 464 Gene3D - 117 234 IPR015300 -
Vivi1g02420 464 Pfam B3 DNA binding domain 143 231 IPR003340 GO:0003677
Vivi1g02420 464 SUPERFAMILY DNA-binding pseudobarrel domain 136 232 IPR015300 -
Vivi1g02420 464 Coils Coil 115 135 - -
Vivi1g02420 464 MobiDBLite consensus disorder prediction 53 73 - -
Vivi1g02420 464 MobiDBLite consensus disorder prediction 337 358 - -
Vivi1g02420 464 MobiDBLite consensus disorder prediction 322 336 - -
Vivi1g02420 464 SMART B3_2 143 234 IPR003340 GO:0003677
Vivi1g02420 464 ProSiteProfiles B3 DNA-binding domain profile. 143 234 IPR003340 GO:0003677
Vivi1g02420 464 MobiDBLite consensus disorder prediction 282 310 - -
Vivi1g02420 464 MobiDBLite consensus disorder prediction 376 440 - -
Vivi1g02420 464 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 48 234 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02420 Vivi-Chr1 50866303 50869953 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02420 10 233 B3 DNA Binding Superfamily AT5G58280 52.191 5.30e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi1g02420 B3 7.5e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02420 - - vvo:131605909 866.685