Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02406 ATGGGGCGTATGCACAGTAGAGGTAAGGGTATTTCATCATCTGCTTTGCCATACAAGAGAACAGCACCAAGCTGGCTAAAGATCACCTCACAAGATGTGGAAGAAACTATTTGCAAGTTTGCGAAAAAGGGTTTGACTCCTTCTCAGATTGGTGTCATTCTTCGTGATTCTCATGGAATTGCTCAGGTTAGGAGTATCACTGGAAGCAAAATCCTTCGCATCCTCAAAGCTCACGGACTTGCACCTGAAATTCCAGAGGATTTGTACCATTTGATCAAGAAGGCAGTTTCAATTAGGAAGCATCTGGAGAGGAACAGGAAGGACAAGGACTCTAAGTTCAGGTTGATTCTTGTCGAGAGCAGAATCCATCGTCTTGCACGCTATTACAAGAAGACCAAGAAGCTCCCACCAGTCTGGAAGTACGAATCAACAACTGCCAGCACTCTGGTTGCTTAG 456 0.4496 MGRMHSRGKGISSSALPYKRTAPSWLKITSQDVEETICKFAKKGLTPSQIGVILRDSHGIAQVRSITGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02406 151 Pfam Ribosomal protein S15 74 145 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vivi1g02406 151 Gene3D - 35 82 - -
Vivi1g02406 151 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 151 IPR023029 -
Vivi1g02406 151 ProSitePatterns Ribosomal protein S15 signature. 98 128 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vivi1g02406 151 SMART Ribosomal_S15_2 70 149 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vivi1g02406 151 Gene3D - 83 151 - -
Vivi1g02406 151 Hamap 30S ribosomal protein S15 [rpsO]. 3 149 IPR023029 -
Vivi1g02406 151 SMART Ribosomal_S13_N_2 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Vivi1g02406 151 FunFam 40S ribosomal protein S13 83 151 - -
Vivi1g02406 151 FunFam 40S ribosomal protein S13 35 82 - -
Vivi1g02406 151 Pfam Ribosomal S13/S15 N-terminal domain 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Vivi1g02406 151 CDD Ribosomal_S15p_S13e 70 143 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vivi1g02406 151 SUPERFAMILY S15/NS1 RNA-binding domain 66 142 IPR009068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02406 Vivi-Chr1 50590070 50591788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02406 1 151 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 93.377 8.95e-104 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02406 K02953 - egr:104442246 293.508