Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02396 ATGGGGAGACAACCTTGTTGTGACAAACTTGGTGTGAAGAAAGGTCCTTGGACTGCTGAGGAAGATAAGAAACTCATCAATTTCATTCTTACAAATGGACAATGTTGTTGGCGCGCTGTGCCTAAACTCGCTGGGCTTAGGCGCTGTGGGAAGAGTTGTCGGCTTCGTTGGACTAATTATCTTCGTCCTGATTTAAAGAGAGGCCTCCTCAATGAAGCAGAGGAGCAGCTTGTTATTGATCTTCATGCCCGTCTTGGCAACAGGTGGTCGAAGATTGCTTCGAGATTACCAGGAAGAACAGATAACGAGATTAAAAATCACTGGAACACTCACATCAAGAAAAAGCTAATTAAGATGGGAATTGATCCCATTACTCATGAGCCTCTGAACAAACAAGCATCATCCAATGATACTTCATCCCCTGCAGAGAATTTGTCACAGCCTGACAATAACCATGAAGTGAAGGAAACTGATGCAGCTGTGAACTCAGAAATGAATTCAAGCTCACCCCCTACAGAAAATTCTTCTGGAGAAGAATCTCTTTTGCTAGATAGTCTCTGTAGTGATGATTCTCTAATGAATAGCCTATGGTTAGATGAAACACCATTGGTGGAAGCACTTTGGGAAATGGACATAACACCTATAGCAAAGACAGAGACAGAGCATACAAAAACTGAGATGAATTTTGTGCCTACTTGGGAGGATAATTGTGCTTGGTTATTGGATTGTCAAGACTTTGGTATTCATGATTTTGGATTTAATTATTTCAATGAGATAGAAACTCTAGGGGCAAAGGAAAATCAACATTAG 810 0.4111 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLNEAEEQLVIDLHARLGNRWSKIASRLPGRTDNEIKNHWNTHIKKKLIKMGIDPITHEPLNKQASSNDTSSPAENLSQPDNNHEVKETDAAVNSEMNSSSPPTENSSGEESLLLDSLCSDDSLMNSLWLDETPLVEALWEMDITPIAKTETEHTKTEMNFVPTWEDNCAWLLDCQDFGIHDFGFNYFNEIETLGAKENQH 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02396 269 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi1g02396 269 Gene3D - 71 160 - -
Vivi1g02396 269 MobiDBLite consensus disorder prediction 128 148 - -
Vivi1g02396 269 Gene3D - 12 67 - -
Vivi1g02396 269 FunFam MYB transcription factor 11 67 - -
Vivi1g02396 269 CDD SANT 16 61 IPR001005 -
Vivi1g02396 269 MobiDBLite consensus disorder prediction 126 179 - -
Vivi1g02396 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi1g02396 269 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 176 - -
Vivi1g02396 269 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi1g02396 269 Pfam Myb-like DNA-binding domain 72 111 IPR001005 -
Vivi1g02396 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi1g02396 269 MobiDBLite consensus disorder prediction 160 179 - -
Vivi1g02396 269 CDD SANT 71 112 IPR001005 -
Vivi1g02396 269 FunFam MYB transcription factor 70 147 - -
Vivi1g02396 269 SMART sant 13 63 IPR001005 -
Vivi1g02396 269 SMART sant 66 114 IPR001005 -
Vivi1g02396 269 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi1g02396 269 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02396 Vivi-Chr1 50489864 50491555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02396 1 253 MYB Transcription Factor Family AT4G22680 60.967 6.89e-104 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1g02396 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02396 K09422 - gmx:100786965 421.779