Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02389 ATGGAGGCTAGCGGCGGTGTTAGTGGTGGCGTTACGGTGGCGGGATCGGATGCTCCGTCGGAGTATCATGTAGCACCGAGAACCGACAACCAAACTCCGACCGGTGGATCGGCAGTTCAGTTTACTACAGCGGTCCAAGGAAATTCTCAGCCGCAAAATCCGCCGCAAACGGCGGTGGTGGCGGTGACGGTGTCGCCGGCGGATACGACGGTTCCTGAGAAAAAGAAGAGAGGCCGGCCGAGGAAGTATGCAGCAGACGGTTCGGTGAGGATGGCGCTGTCTCCGAAGCCGATATCCTCCTCTGCTCCGTTGCCGCCGGTGATCGATTTCACGGCGGAGAAGCGTGCGAAAGTGCGGCCAGTTAGTTCGGTGAGCAAAGCGAAGTTCGAGTTGGAAAATATAGGTGAATGGGTTCCTAGCTCAGCTGGTTCAAATTTCACACCTCACATCATTACTGTTAATACTGGAGAGGATGTTACTATGAAGGTGATATCATTTTCTCAGCAAGGGCCTCGAGCTTTATGCGTTCTTTCAGCAAATGGTGTTATAAAAAGTGTCACACTTCGTCAGCCCGATGCTTCTGGGGGCACATTGACATATGAGGGACTGTTTGAAATTCTTTCTTTATCTGGTTCTTTCATGCCAAACGATAGCGGAGGAACACGGAGCAGATCAGGTGGTATGAGTGTTTCTTTATCAAGTCCTGATGGCCGTGTTGTTGGTGGAGGAGTAGCTGGTCTATTGGTGGCTGCAAGTCCAGTGCAGGTAGTGGTTGGTAGTTTTATGGCAGAAAACCAACATGAGCAAAAGGCAAGAAATCAGAAACATGATGTGATATCAACTGTGACAACGGCTGCTGTTGTTCCCATCCCTACTCTTGATCCAATACCTATTCTATCATCAGTAACTTCCTTCCGTGGAGATAATTGGTCTGCTGTGCAAGCACCGGAAGCGAAGGAAAAACCTGTTTCTGACATTAATGTAGCACTTCCTGGCGGTTGA 1002 0.501 MEASGGVSGGVTVAGSDAPSEYHVAPRTDNQTPTGGSAVQFTTAVQGNSQPQNPPQTAVVAVTVSPADTTVPEKKKRGRPRKYAADGSVRMALSPKPISSSAPLPPVIDFTAEKRAKVRPVSSVSKAKFELENIGEWVPSSAGSNFTPHIITVNTGEDVTMKVISFSQQGPRALCVLSANGVIKSVTLRQPDASGGTLTYEGLFEILSLSGSFMPNDSGGTRSRSGGMSVSLSSPDGRVVGGGVAGLLVAASPVQVVVGSFMAENQHEQKARNQKHDVISTVTTAAVVPIPTLDPIPILSSVTSFRGDNWSAVQAPEAKEKPVSDINVALPGG 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02389 333 MobiDBLite consensus disorder prediction 1 86 - -
Vivi1g02389 333 FunFam AT-hook motif nuclear-localized protein 1-like 148 278 - -
Vivi1g02389 333 Gene3D - 148 281 - -
Vivi1g02389 333 MobiDBLite consensus disorder prediction 25 64 - -
Vivi1g02389 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 43 281 IPR039605 GO:0003680
Vivi1g02389 333 CDD DUF296 147 238 IPR005175 -
Vivi1g02389 333 Pfam Plants and Prokaryotes Conserved (PCC) domain 148 261 IPR005175 -
Vivi1g02389 333 ProSiteProfiles PPC domain profile profile. 143 284 IPR005175 -
Vivi1g02389 333 MobiDBLite consensus disorder prediction 70 84 - -
Vivi1g02389 333 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02389 Vivi-Chr1 50195104 50197498 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02389 1 328 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 58.192 2.77e-115 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02389 - - gmx:100801730 454.521