Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02365 ATGGCTCGTCCGATGGAAAAGATTATTGACATCAACGACACAAAAGAGCTGTGGAAAGTGGCGGTCAGAGTGTCCCATAAATGGAAGGTACTGTCCAATAATAAGGAGCACTTCGAGATGATATTTGAAGACAAAGAGGGTTGTGATATTCACGTCATTGTTCCAACTGCATGCATGGCCGCATACCATGACAAATTTGAGGTGGGCCATACCTATACCGTGTCAAATTTTGCGGTTCACCCAAATAACTTAGTTTTCAAACCATGCTCCCACAAGTTCTTGGTTAAATTCACGGGAGGCACTGCTGTTGGTGATGTTGACAAACATGAGATACCCCCAAAACCCCGAACTTTCACCAGTTTCTCTGACATCATAACCGGAAACTTTCAAAAGAACGTGCTCATTGACGTTATTGGTATGCTCGAGAGTATTGGGTATCAACAAATGCAGAGTGGGGGGAAAAAACTTCAGGTTAATTTTCTGCTCAGAGATTCGAGCAACAACACCATAAATTGCACCCTTTGGGAGGACTATGCCAACGATTTTTTTAAGTTTAACGAGAAAAACACTGCAACAACTGACCCGACCGTTGTTTTGCTTCAGTATGCAAAAGTTAAGGAGGCTGGCCATTACCCACTCTCTGTTACCAACACATTCCATGTTACCAAGCTCCTTATCAATCCAGATTTGCCTTGTGTCAAGGACTTCCTCAACAGTTTCCCAAAGGAATCACTGCGTATTGTTTCCACACAGCAGACCTCTCAGTCTCAACAATACTCCCGCAGTTCCACAAATGACAGTGTTGGTCATAGTCTTGCACATAAGTTGCTGCACGGGGCTGTTTCTAATACTTTCTGTGCTACGTATGCAAAAACGAGAAAACTAATTGCGTCTTCCTACGGATGGTACTACCAGTGCTGCCATGAATGCACTAAATCTGTTCGCGGTGACAAACCTCCCTACAAATGTGATAATGGACATTCTACTGAGGCTGAAATCTATAAGTATAAGATTGAAGTTGAAGGTTTCCATGGGGAAACTTCTTGCAAATTTATTTTCTGGGATCGAGAATGTACTGAAATCTTAGAGTTGTCAGCTGCTCAGATGCGGGAAACAATGATAAAGGCTGGTATCACAGATCCATTGGAATTCCCGTTAGCTCTCGATAAAATGTTGGGCCTGGATCTTGCTTTAAGGGTTAAATGGCAGCCTAGCTGGGACAGCGCCTCAGTTGTCATGTTCATAAAAGATAGCGACTTCGTTAAACAATTCAAGGCGCCTTGGACGGACAGTCAGGTTGTGAGTTCTGAACCATCCGCAACACCCCTTCCACTGCAGATTAAAGAGAGCGTGGATGAGGCTAAAACTGATGCTGCTGATGATTGTGACGTTGTTACGGACCTAGAGATAACATCCAAGCACAACCCGGAGCCTTTAACACCCACCGCAAAAAGGCAGAATCATGATGCCTCCAGTGAATCAACATCTGTACGTGATGGTGAACTGTCTTCAACCAAACTGAAGAAGATCATCAAGTTGGAGAACAACAAATAG 1554 0.4376 MARPMEKIIDINDTKELWKVAVRVSHKWKVLSNNKEHFEMIFEDKEGCDIHVIVPTACMAAYHDKFEVGHTYTVSNFAVHPNNLVFKPCSHKFLVKFTGGTAVGDVDKHEIPPKPRTFTSFSDIITGNFQKNVLIDVIGMLESIGYQQMQSGGKKLQVNFLLRDSSNNTINCTLWEDYANDFFKFNEKNTATTDPTVVLLQYAKVKEAGHYPLSVTNTFHVTKLLINPDLPCVKDFLNSFPKESLRIVSTQQTSQSQQYSRSSTNDSVGHSLAHKLLHGAVSNTFCATYAKTRKLIASSYGWYYQCCHECTKSVRGDKPPYKCDNGHSTEAEIYKYKIEVEGFHGETSCKFIFWDRECTEILELSAAQMRETMIKAGITDPLEFPLALDKMLGLDLALRVKWQPSWDSASVVMFIKDSDFVKQFKAPWTDSQVVSSEPSATPLPLQIKESVDEAKTDAADDCDVVTDLEITSKHNPEPLTPTAKRQNHDASSESTSVRDGELSSTKLKKIIKLENNK 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02365 517 SUPERFAMILY Nucleic acid-binding proteins 117 243 IPR012340 -
Vivi1g02365 517 CDD RPA1_DBD_B_like 136 241 - -
Vivi1g02365 517 MobiDBLite consensus disorder prediction 468 502 - -
Vivi1g02365 517 Gene3D - 4 108 IPR012340 -
Vivi1g02365 517 Gene3D - 110 248 IPR012340 -
Vivi1g02365 517 Gene3D - 249 426 IPR012340 -
Vivi1g02365 517 PANTHER OS03G0429900 PROTEIN 14 484 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi1g02365 517 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
Vivi1g02365 517 SUPERFAMILY Nucleic acid-binding proteins 294 404 IPR012340 -
Vivi1g02365 517 CDD RPA1_DBD_A_like 19 103 - -
Vivi1g02365 517 SUPERFAMILY Nucleic acid-binding proteins 7 103 IPR012340 -
Vivi1g02365 517 MobiDBLite consensus disorder prediction 473 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02365 Vivi-Chr1 49903933 49906880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02365 1 347 Core DNA Replication Machinery Family AT5G08020 22.826 2.83e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02365 - - vvo:131605367 700.279