Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02347 ATGGCTGCAATTCATCAACATTGTAGCTTGTTGAATACAATTACAATTACATTGATGCTCATAATTATCGCTAAGCCAGCAGTAGTAACAGCCACATTTCAACCGAGCCCATGGACTCTTGCTTATGCCACATTTTATGGCGACGAGACCGCTTCCGCCACCATGGGAGGAGCATGTGGGTATGGAAATTTGTTTGTGAACGGGTATGGGACAGACACTGCAGCATTGAGTTCAAGATTGTTCAATAATGGATATGCATGTGGGACTTGTTATCAAATAAAATGCGTCCAATCCAAGTTCTGTAACACCAACGTGCCTTACACCACAGTTACTGCCACCAACCTGTGCCCTCCTAATTGGTCTCAAGCCTCTGATAATGGTGGATGGTGCAACCCACCACGTTCACATTTTGATATGTCTAAACCCGCCTTCATGAAAATCGCACAATGGAAGGCTGGTATAGTCCCTATTATGTATCGCAGGGTACCTTGTGCGAGAAAGGAAGGATTTCGATTCTCTTTCCAAGGAAATGGGTATTGGTTATTAGTTTATGTGATGAATGTGGGAGGTGGAGGAGATATAGCCAACATGTGGGTGAAAGGAAGTAGAACAGGATGGATTAGAATGAGCCACAATTGGGGTGCTTCTTACCAAGCATTTGCAACACTTGGTGGCCAAACACTTTCTTTCAAGATTACTTCTTATACAACCAAAGAAACTATATTTGCATGGAATGTTGCTCCTTCCAATTGGAGTCCTGGATTAACCTATTCCACTCCTACAAACTTCCATTGA 795 0.4302 MAAIHQHCSLLNTITITLMLIIIAKPAVVTATFQPSPWTLAYATFYGDETASATMGGACGYGNLFVNGYGTDTAALSSRLFNNGYACGTCYQIKCVQSKFCNTNVPYTTVTATNLCPPNWSQASDNGGWCNPPRSHFDMSKPAFMKIAQWKAGIVPIMYRRVPCARKEGFRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSRTGWIRMSHNWGASYQAFATLGGQTLSFKITSYTTKETIFAWNVAPSNWSPGLTYSTPTNFH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02347 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 169 IPR007112 -
Vivi1g02347 264 Pfam Lytic transglycolase 73 159 IPR009009 -
Vivi1g02347 264 SUPERFAMILY Barwin-like endoglucanases 37 187 IPR036908 -
Vivi1g02347 264 Gene3D - 23 165 IPR036908 -
Vivi1g02347 264 Gene3D - 169 264 IPR036749 -
Vivi1g02347 264 CDD DPBB_EXPA_N 37 164 - -
Vivi1g02347 264 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Vivi1g02347 264 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Vivi1g02347 264 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Vivi1g02347 264 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Vivi1g02347 264 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Vivi1g02347 264 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Vivi1g02347 264 SUPERFAMILY PHL pollen allergen 167 258 IPR036749 -
Vivi1g02347 264 PANTHER EXPANSIN-A15 19 259 IPR002963 GO:0009664
Vivi1g02347 264 PRINTS Expansin signature 127 144 IPR002963 GO:0009664
Vivi1g02347 264 PRINTS Expansin signature 168 180 IPR002963 GO:0009664
Vivi1g02347 264 PRINTS Expansin signature 108 118 IPR002963 GO:0009664
Vivi1g02347 264 PRINTS Expansin signature 68 82 IPR002963 GO:0009664
Vivi1g02347 264 PRINTS Expansin signature 144 157 IPR002963 GO:0009664
Vivi1g02347 264 PRINTS Expansin signature 180 201 IPR002963 GO:0009664
Vivi1g02347 264 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Vivi1g02347 264 SMART dpbb_1 73 159 IPR007112 -
Vivi1g02347 264 Pfam Expansin C-terminal domain 171 248 IPR007117 -
Vivi1g02347 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 259 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02347 Vivi-Chr1 49651410 49652841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02347 18 264 Expansin Gene Family AT1G62980 65.182 3.52e-122 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02347 - - gmx:100781459 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02347 1 49651410 49652841 Vivi1g02347 1 49651410 49652841 ECH
Vivi1g02347 1 49651410 49652841 Vivi2g03793 2 149175594 149176993 PCT