Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02342 ATGGTGAGAGGAAAAACTCAACTGAAGCTAATCGAAAATGAGTCCTATAGACAAGTAACTTTCTCAAAGAGAAGAAATGGGTTGCTTAAAAAGGCTTTTGAACTTTCAGTTCTTTGTGATGCTGAAGTGGCACTCATCATCTTCTCTACCACAGGGAAACTCCATGAGTTCTCCAGTTCAAGTATAAACAAAACAGTGGAACGGTATCAACGGAAAGTCAAGGATTTGGCTCTCAGCACCAAAGGAATCCAAGAAAATACACAGAACCTAAAGGAATGTGATATTAACACAACAATGAAGTTGGAGCAACTAGAACTTTATAAAAGGAAGCTGTTGGGAGATGAATTGGATAGATGTGGTATTGAAGAATTACAAAAGATTGAAAATCAACTAGAATACAGCTTAAGCAAAATTAGGGCAAGAAAGAATCAACTGTTGCTGGAACAAATTGAAAAGCTAAAAAAACAGGAATGGTGCCTACTTGAAAAAAATAGACGCTTACGTGAGCAATGTGGAATTGAACAACAAGATATAGAAGTCTTAGCGCAAAGTGAGCTCAATGAGGAAGTGGAGACGGAATTGTTCATAGGACGACCTGAGAAACGAATGAATTGTGAGCAGAAATAG 627 0.3764 MVRGKTQLKLIENESYRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTTGKLHEFSSSSINKTVERYQRKVKDLALSTKGIQENTQNLKECDINTTMKLEQLELYKRKLLGDELDRCGIEELQKIENQLEYSLSKIRARKNQLLLEQIEKLKKQEWCLLEKNRRLREQCGIEQQDIEVLAQSELNEEVETELFIGRPEKRMNCEQK 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02342 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Vivi1g02342 208 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Vivi1g02342 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi1g02342 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi1g02342 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi1g02342 208 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1g02342 208 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Vivi1g02342 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi1g02342 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Vivi1g02342 208 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Vivi1g02342 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi1g02342 208 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Vivi1g02342 208 Pfam K-box region 88 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1g02342 208 Coils Coil 150 170 - -
Vivi1g02342 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02342 Vivi-Chr1 49460619 49472076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02342 1 202 MADS-box Gene Family AT4G22950 56.398 2.89e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi1g02342 K-box 6.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02342 - - psat:127074094 333.954