Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02340 ATGGGTTTGGCTGGGTTACTGGTGTCTCACCTTCAGTGCGCAAATGACGCGGTTCTTTTAGGGAGACAAATGTGGGCAATTTGTGGATTATTGAGTATAAACAAGACAGTGGAACGCTATCAACGGAAAGTTAAGGACTTGCCTATCAGCACCAAAGAAATTCAAGATAATACACAGAACCTAAAGGAATGTGATATCATTACAACGAATAAGTTGGATCAACTAGAACACTGCAAAAGGAAGCTGTTGGTGGGAGATGAATTGGATACATGTGGTATTGAAGAATTACAACAGATTGAAAATCAACTCGAATGCAGCTTAAGCAAAATTAGGGCAAGAAAGGAAATGTATCTACTTCAAGAAAATCGATGCTTACACGAGAAGTGTGGAATTGAAGAAGGTGGTTGTTTAAGTGAACAAGATATGGGACTAAATACAAAAAGTGTGCAGGGTGGGGAGGTGGAAACCGAATTGTTCATAGGACGACCTGGGAAACAAATGCACTGA 507 0.4024 MGLAGLLVSHLQCANDAVLLGRQMWAICGLLSINKTVERYQRKVKDLPISTKEIQDNTQNLKECDIITTNKLDQLEHCKRKLLVGDELDTCGIEELQQIENQLECSLSKIRARKEMYLLQENRCLHEKCGIEEGGCLSEQDMGLNTKSVQGGEVETELFIGRPGKQMH 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02340 168 Coils Coil 93 113 - -
Vivi1g02340 168 ProSiteProfiles K-box domain profile. 58 157 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1g02340 168 Pfam K-box region 57 128 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02340 Vivi-Chr1 49452404 49454906 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02340 32 163 MADS-box Gene Family AT4G22950 40.940 8.76e-22 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02340 - - vvo:131631681 336.265