Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02330 ATGAAGTCATCACTTCATGAGTCTAGTTCCGGACACATATCAGAGTACTCCTACAACTCAAGCTCATCATCATCATCATCATCATCATCATCGAAAACAAGTTGCTACGAAGAAATCTTGTTAGCGTCGGAGCAACCAAAGAGGCGAGCTGGGAGACGAAAATTCAAGGAGACAAGGCATCCAGTATACAGAGGAGTACGAAGGAGGAACAACAACAAGTGGGTTTGCGAGGTGCGTGTTCCGAACGACAAGTCCACGAGGATCTGGTTAGGAACATATCCAACGCCTGAGATGGCGGCACGTGCACACGACGTTGCTGCGCTGGCACTTCGTGGGAAATCAGCTTGTCTCAACTTTGCTGACTCGGCTTGGCGGTTGCCATTGCCGGTGTCGACTAACGCGGAGGAGATTCGGAAAATGGCGGCGGAGGCTGCTTTGGCATTTGCGGTTGAGGACAGTAATGAACAAGTTATAACTAGTGATTCTGATGTTTGCAACAGCGGTATTAATAGCGTTGGTGCTATGGAAGATTGTGATAAAAGTTTGAAGGGATTGTGTGTGGAAGTTCCGGGTGATTCCATATTTGAGGAGCAGGAAGTGTTGCATGATTGGTTCCAGAGTATGGCAGATGAGCCTTTACGATCTCCGACGAGTCCATTTATGATATATGGTAGGGATCATTGGCATAATATTGATCAAGTTGAAGTTGAGGTGTCTTTGTGGAACTTTACCATCTAA 738 0.4661 MKSSLHESSSGHISEYSYNSSSSSSSSSSSSKTSCYEEILLASEQPKRRAGRRKFKETRHPVYRGVRRRNNNKWVCEVRVPNDKSTRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLPLPVSTNAEEIRKMAAEAALAFAVEDSNEQVITSDSDVCNSGINSVGAMEDCDKSLKGLCVEVPGDSIFEEQEVLHDWFQSMADEPLRSPTSPFMIYGRDHWHNIDQVEVEVSLWNFTI 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02330 245 SMART rav1_2 62 126 IPR001471 GO:0003700|GO:0006355
Vivi1g02330 245 Gene3D AP2/ERF domain 62 121 IPR036955 GO:0003700|GO:0006355
Vivi1g02330 245 FunFam Ethylene-responsive transcription factor 2 61 121 - -
Vivi1g02330 245 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Vivi1g02330 245 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Vivi1g02330 245 MobiDBLite consensus disorder prediction 1 32 - -
Vivi1g02330 245 SUPERFAMILY DNA-binding domain 62 122 IPR016177 GO:0003677
Vivi1g02330 245 Pfam AP2 domain 61 112 IPR001471 GO:0003700|GO:0006355
Vivi1g02330 245 CDD AP2 63 122 IPR001471 GO:0003700|GO:0006355
Vivi1g02330 245 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700|GO:0006355
Vivi1g02330 245 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 19 242 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02330 Vivi-Chr1 49116005 49116970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02330 41 155 AP2-EREBP Transcription Factor Family AT5G51990 73.043 7.45e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g02330 AP2 7.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02330 - - gmx:100779318 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02330 1 49116005 49116970 Vivi1g02330 1 49116005 49116970 ECH
Vivi1g02330 1 49116005 49116970 Vivi2g03809 2 149549133 149550012 PCT