Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02329 ATGTCTTCTTCTTCATCTTCCAAAAAACACCCAACTTACCACGGAATTCGAAGCCGTGGAGGAAAATGGGTGACTGAAATCCGCGAGCCTCGCAAAACCAACCGCATATGGCTAGGCACATTCTCTACCCCTGAGATGGCTGCTGCAGCTTATGACGTTGCGGCTTTGGCTCTCAAAGGTAGGGACGCAGTGCTAAACTTTCCTGATAGGGCTAGCATGTATCCAGTCCCGGCTTCCAATTCTGCCGATGACATACGCAACGCTGCCATTGCTGCAGCTGAATTCATGAAAGCTGAATCCAGCAATGATACTGGTTTTGAAGTTAATAATTCATATCAAACTGATCAGTTTCTTGATGAAGAAGCTATATTCTCCATGCCAAGTTTGATGGTAGCAATGGCTGAGGGAATGATGCTTTCACCTCCCAGAATGAATTCACCGCCGTCTGATTACTCTCAGGAATATTACACTATGGGACAAAGCTTGTGGAACCTTTTTTGA 501 0.4571 MSSSSSSKKHPTYHGIRSRGGKWVTEIREPRKTNRIWLGTFSTPEMAAAAYDVAALALKGRDAVLNFPDRASMYPVPASNSADDIRNAAIAAAEFMKAESSNDTGFEVNNSYQTDQFLDEEAIFSMPSLMVAMAEGMMLSPPRMNSPPSDYSQEYYTMGQSLWNLF 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02329 166 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Vivi1g02329 166 FunFam Ethylene-responsive transcription factor 2 12 69 - -
Vivi1g02329 166 CDD AP2 13 69 IPR001471 GO:0003700|GO:0006355
Vivi1g02329 166 Pfam AP2 domain 14 60 IPR001471 GO:0003700|GO:0006355
Vivi1g02329 166 Gene3D AP2/ERF domain 12 69 IPR036955 GO:0003700|GO:0006355
Vivi1g02329 166 SUPERFAMILY DNA-binding domain 12 69 IPR016177 GO:0003677
Vivi1g02329 166 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 164 IPR045277 GO:0003700
Vivi1g02329 166 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02329 Vivi-Chr1 49080481 49081370 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02329 2 163 AP2-EREBP Transcription Factor Family AT5G52020 51.977 2.07e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g02329 AP2 1.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02329 - - vvo:131631089 289.656