Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02327 ATGCATATATCTACTCTTACTATCTTCACTAACATAATTCAAACCATTCTCTTCTTCTTCTTCTTAATTCATCCAATCATTTTCATAACTCAACCTTTTACTTCAAGTTTACACTTTTTGCTGCAATTTACATTATTTCAAACAACCATGTCTTCTTCTTCTTCCAAAAGACATCCAACATACCACGGAATTCGAAGCCGGGGAGGAAAATGGGTGACTGAAATCCGCGAGCCTCGCAAAACCAACCGCATATGGCTGGGCACATTCTCTACCCCTGAGATGGCAGCCGCAGCTTATGACGTTGCGGCTTTGGCTCTCAAAGGTCGGGAGGCAGTGCTAAACTTTCCTGACAGGGCTAGCATGTATCCCGTACCGGCTTCCAATTCTTCTGATGACATACGCGATGCTGCAACTGCTGCAGCTGAATTCATGAACGCTGAATCCAGCAATGACACTGGTTTTGAAGTTAATCCTTCGTATCAACCTGATCAGTTTCTTGATGAGGAAGCTATATACTCCATGCCAAGTTTGATGGTAGCAATGGCGGAGGGAATGATGCTTTCACCTCCCAGAATGAATCCACCACCCTCTGATTACTCACATGATCAATATTACACTATGGGACAAAGTTTGTGGAACCATTTTTGA 648 0.4321 MHISTLTIFTNIIQTILFFFFLIHPIIFITQPFTSSLHFLLQFTLFQTTMSSSSSKRHPTYHGIRSRGGKWVTEIREPRKTNRIWLGTFSTPEMAAAAYDVAALALKGREAVLNFPDRASMYPVPASNSSDDIRDAATAAAEFMNAESSNDTGFEVNPSYQPDQFLDEEAIYSMPSLMVAMAEGMMLSPPRMNPPPSDYSHDQYYTMGQSLWNHF 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02327 215 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 55 213 IPR045277 GO:0003700
Vivi1g02327 215 SMART rav1_2 60 122 IPR001471 GO:0003700|GO:0006355
Vivi1g02327 215 Pfam AP2 domain 62 108 IPR001471 GO:0003700|GO:0006355
Vivi1g02327 215 CDD AP2 61 117 IPR001471 GO:0003700|GO:0006355
Vivi1g02327 215 Gene3D AP2/ERF domain 60 117 IPR036955 GO:0003700|GO:0006355
Vivi1g02327 215 SUPERFAMILY DNA-binding domain 60 117 IPR016177 GO:0003677
Vivi1g02327 215 FunFam Ethylene-responsive transcription factor 2 60 117 - -
Vivi1g02327 215 ProSiteProfiles AP2/ERF domain profile. 60 116 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02327 Vivi-Chr1 49062096 49062959 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02327 55 214 AP2-EREBP Transcription Factor Family AT5G52020 50.286 2.89e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi1g02327 AP2 2.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02327 - - vvo:131631089 389.423