Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02325 ATGTCTTCTTCTTCCAAAAGACACCCAACATACCACGGAATTCGAAGCCGGGGAGGAAAGTGGGTGACTGAAATCCGCGAGCCTCGCAAAACCAACCGCATATGGCTAGGCACATTCCCTACTCCTGAAATGGCAGCCGCAGCATACGATGTCGCAGCTTTGGCTCTCAAAGGTCGGGAGGCAGTGCTAAACTTTCCTGACAGGGCTAGCATGTATCCCGTACCGGCTTCCAATTCTTCAGATGACATACGCAACGCTGCTACTGCTGCAGCTGAATTCATGAACGCTGAATTCAGCAATGATGCTGGTTATGAAGTTAATCCTTCGTATCAAACCGATCAGTTTCTTGATGAGGAAGCTATATTCTCCATGCCAAGTTTAATGGTAGCAATGGCTGAGGGAATGATGCTTTCACCTCCCAGAATGAATTCACCTCCCTCTGATTACTTACATGATCAATATTACACTATGGGACAAAGTTTGTGGAACCATTTTTGA 498 0.4659 MSSSSKRHPTYHGIRSRGGKWVTEIREPRKTNRIWLGTFPTPEMAAAAYDVAALALKGREAVLNFPDRASMYPVPASNSSDDIRNAATAAAEFMNAEFSNDAGYEVNPSYQTDQFLDEEAIFSMPSLMVAMAEGMMLSPPRMNSPPSDYLHDQYYTMGQSLWNHF 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02325 165 SMART rav1_2 10 72 IPR001471 GO:0003700|GO:0006355
Vivi1g02325 165 SUPERFAMILY DNA-binding domain 10 67 IPR016177 GO:0003677
Vivi1g02325 165 CDD AP2 11 67 IPR001471 GO:0003700|GO:0006355
Vivi1g02325 165 Gene3D AP2/ERF domain 10 67 IPR036955 GO:0003700|GO:0006355
Vivi1g02325 165 FunFam Ethylene-responsive transcription factor 2 10 67 - -
Vivi1g02325 165 ProSiteProfiles AP2/ERF domain profile. 10 66 IPR001471 GO:0003700|GO:0006355
Vivi1g02325 165 Pfam AP2 domain 12 58 IPR001471 GO:0003700|GO:0006355
Vivi1g02325 165 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 163 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02325 Vivi-Chr1 49036135 49037144 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02325 5 164 AP2-EREBP Transcription Factor Family AT5G52020 50.289 6.24e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g02325 AP2 6.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02325 - - vvo:131631089 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02325 1 49036135 49037144 Vivi1g02325 1 49036135 49037144 ECH