Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02322 ATGTCTTCTTCTTCTTCCAAAAGACACCCAACATACCACGGAATTCGAAGCCGGGGAGGAAAATGGGTGACTGAAATCCGCGAGCCTCGCAAAACCAACCGCATATGGTTGGGCACATTCCCCACTCCTGAGATGGCTGCCGCAGCATATGACGTTGCGGCTTTAGCTCTCAAAGGTCGGGACGCAGTGCTAAACTTTCCTGACAGGGCTAGCATGTATCCCGTACCGGCTTCCAATTCGTCTGATGACATACGCAACGCTGCTACTGCTGCAGCTGAATTCATGAACGCTGAATTCAGCAATGATGCTGGTTATGAAGTTAATCCTTCCTATCAAGCCGATCAGTTTCTTGATGAGGAAGCTATATTCTCCATGCCAAGTTTAATGGTAGCAATGGCTGAGGGAATGATGCTTTCACCTCCCAGAATGAATTCACCTCCCTCTGATTACTTACATGACCAATATTACACTATGGGACAAAGTTTGTGGAACCATTTTTGA 501 0.4711 MSSSSSKRHPTYHGIRSRGGKWVTEIREPRKTNRIWLGTFPTPEMAAAAYDVAALALKGRDAVLNFPDRASMYPVPASNSSDDIRNAATAAAEFMNAEFSNDAGYEVNPSYQADQFLDEEAIFSMPSLMVAMAEGMMLSPPRMNSPPSDYLHDQYYTMGQSLWNHF 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02322 166 SUPERFAMILY DNA-binding domain 11 68 IPR016177 GO:0003677
Vivi1g02322 166 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 164 IPR045277 GO:0003700
Vivi1g02322 166 SMART rav1_2 11 73 IPR001471 GO:0003700|GO:0006355
Vivi1g02322 166 FunFam Ethylene-responsive transcription factor 2 11 68 - -
Vivi1g02322 166 Gene3D AP2/ERF domain 11 68 IPR036955 GO:0003700|GO:0006355
Vivi1g02322 166 Pfam AP2 domain 13 59 IPR001471 GO:0003700|GO:0006355
Vivi1g02322 166 CDD AP2 12 68 IPR001471 GO:0003700|GO:0006355
Vivi1g02322 166 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02322 Vivi-Chr1 49011093 49012628 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02322 6 165 AP2-EREBP Transcription Factor Family AT5G52020 50.867 1.12e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1g02322 AP2 6.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02322 - - vvo:131631089 314.694