Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02314 ATGGGAAAAGCATCACGCTGGTTTCGCGGTTTTCTCGGTCTAAAAAAACCGGAAAACGGTTCAACCGATCAGAAACCGCCCAAAGAGAAACGGAGATGGAGTTTCGTCAAATCATACAGAGAAGAACAACAACAACAACCACTGCAGCATCACAACAGCCACGTCACGTTCTCAACAGAACACGTAAACAACGACAACAAACAGGCCATCGCAGTCGCTGCTGCCACCGCTGCCGCCGCGGAGGCCGCCGTGGCCGCTGCTAAAGCCGCTGCCGACGTCGTTCGTTTCAACAGCAGTAACGGCGTCGTCAGGATACGCGAACAATGGGCGGCCGTTAAGATCCAAGCCGCTTTTCGAGGCAGTTTGGCGAGGAAGGCGCTGCGAGCATTAAAAGGGCTGGTGAAGCTCCAGGCTCTTGTGAGAGGTCACATTGAGAGGAAAAGAACAGCAGAGTGGCTCAAACGGATGCAATCACTTGTACGGGCACAGGCCCGATTTAATGCAGCACGTGCCCTACAAACCTCCCATTCTAATGGGGGTCCAGCAACACCAGAGAAATCAGAAAGCCCTGTTAGATCTAGGAGCATGAAATCCGAACATTCACCAATATTCAAGAGAAACGGTTCCAAATCATGTCTCTCATTCAGCGGCAATATATCAGAGAATCAGATAGATGAACAATCATGGAATAGAGTAAAATCACTAATAAGATCCTATAGCAGGAGCGACGAGAAAACCGAAAGGATTGTGGAAATTGATTCGGGAAAACAACACATAATTGCCTCAAAACGTAGAAACCTCTTTCACTCCATAAGTGATACCGATCATTATTATTACAGTCAGAATTTAACCCCTACAAAGGATTCAAAATCTCAACATTCTAGTCATAGCCAATCATGTGAGGTTCAATCTTATTACAACCCGCTTAAACTCAGCGAAGTCGAAGAGAACAGTCCTCAATTTTTATCATCTGCAACTTCAAAAGAGGATGGATACAAAAGAAGCCCATTTACTCCTACAAAGAGTGATGGTTCAAGAAGCAACCTTAAAGGCTATTCTGATTACCCAAGTTACATGGCATATACAGAGTCATCAAAGGCGAAAGTTAGATCCATGAGTGCACCAAAACAAAGGCCTCAACATGAGAAATATGGTTCCTCTAATAGGTACTCACTCAATGGACATGACATTGCAAGATTGACCGCACAGAGAAACTCTGCACTGCAAGCAAGTTTTGCAAGTAAAGGGTATCCAGGTTCTGGTCGTTTGGATAAGCTTGGAATGCCTGTGGGGTATAGATAA 1302 0.4547 MGKASRWFRGFLGLKKPENGSTDQKPPKEKRRWSFVKSYREEQQQQPLQHHNSHVTFSTEHVNNDNKQAIAVAAATAAAAEAAVAAAKAAADVVRFNSSNGVVRIREQWAAVKIQAAFRGSLARKALRALKGLVKLQALVRGHIERKRTAEWLKRMQSLVRAQARFNAARALQTSHSNGGPATPEKSESPVRSRSMKSEHSPIFKRNGSKSCLSFSGNISENQIDEQSWNRVKSLIRSYSRSDEKTERIVEIDSGKQHIIASKRRNLFHSISDTDHYYYSQNLTPTKDSKSQHSSHSQSCEVQSYYNPLKLSEVEENSPQFLSSATSKEDGYKRSPFTPTKSDGSRSNLKGYSDYPSYMAYTESSKAKVRSMSAPKQRPQHEKYGSSNRYSLNGHDIARLTAQRNSALQASFASKGYPGSGRLDKLGMPVGYR 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02314 433 Gene3D - 104 157 - -
Vivi1g02314 433 MobiDBLite consensus disorder prediction 190 204 - -
Vivi1g02314 433 MobiDBLite consensus disorder prediction 368 390 - -
Vivi1g02314 433 MobiDBLite consensus disorder prediction 1 52 - -
Vivi1g02314 433 MobiDBLite consensus disorder prediction 282 301 - -
Vivi1g02314 433 MobiDBLite consensus disorder prediction 171 205 - -
Vivi1g02314 433 Pfam IQ calmodulin-binding motif 134 148 IPR000048 GO:0005515
Vivi1g02314 433 Pfam IQ calmodulin-binding motif 109 128 IPR000048 GO:0005515
Vivi1g02314 433 Pfam Protein of unknown function (DUF4005) 318 397 IPR025064 -
Vivi1g02314 433 ProSiteProfiles IQ motif profile. 131 158 IPR000048 GO:0005515
Vivi1g02314 433 ProSiteProfiles IQ motif profile. 107 135 IPR000048 GO:0005515
Vivi1g02314 433 SMART iq_5 129 150 IPR000048 GO:0005515
Vivi1g02314 433 SMART iq_5 106 128 IPR000048 GO:0005515
Vivi1g02314 433 MobiDBLite consensus disorder prediction 316 353 - -
Vivi1g02314 433 MobiDBLite consensus disorder prediction 21 38 - -
Vivi1g02314 433 PANTHER IQ-DOMAIN 5-RELATED 1 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02314 Vivi-Chr1 48928103 48931259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02314 1 433 IQD Protein Family AT4G23060 42.610 1.80e-73 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02314 - - gmx:100793587 452.21