Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02313 ATGGCATCATCATCCTCCACCAACAGCGCAAACTACGACGTGCCGTGGGTTGAGAAGTACCGTCCCAGCAAGGTCGTCGACATCGTCGGCAATGAAGACGCCGTCTCCCGTCTTCAAGTCATCGCTCGTGACGGCAACATGCCCAACCTCATTTTATCAGGTCCTCCTGGAACTGGAAAAACCACTAGTATACTCGCCCTTGCGCACGAGCTTCTCGGTCCTAATTATAGAGAAGCTGTTCTTGAACTAAATGCATCAGATGATAGAGGAATAGATGTTGTGAGGAACAAGATCAAGATGTTTGCTCAAAAGAAAGTAACACTTCCTCCGGGGAGACACAAAGTTGTTATACTCGACGAAGCTGACAGTATGACATCTGGAGCACAACAAGCTTTAAGAAGGACGATGGAGATATATTCTAATTCTACTCGTTTCGCGCTTGCTTGTAATACATCGGCTAAGATTATTGAGCCAATTCAGAGTAGGTGTGCAATTGTGAGATTTTCAAGACTATCTGATCAAGAGATACTTGGTCGTCTCATGGTCGTGGTTCAAGCTGAGAAGGTTCCCTACGTCCCTGAAGGACTCGAGGCTATCATTTTCACTGCTGATGGTGATATGAGACAGGGATTGAACAACTTGCAAGCAACATACAGTGGGTTTCAGTTTGTAAACCAAGCAAATGTTTTCAAGGTTTGTGACCAGCCACACCCACTGCATGTGAAGAATATGGTGCGCAATGTAATTGAAGGGAATTTCGATGAGGCTTGTTCCGGCCTCAAGCAATTGTATGACTTGGGATATTCGCCTACAGATATCATCACCACACTTTTTCGTATCATAAAAAGTTATGATATGGCAGAGTACTTGAAATTAGAATTCATGAAGGAAACTGGATTTGCTCATATGAGGATTTGTGACGGAGTTGGTTCTTATCTTCAGATGTGTGGTCTACTGGCCAAGTTTTCTCTAGTTCGCGAAACTGCTAAAGCTCCATGA 999 0.4424 MASSSSTNSANYDVPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQGLNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKSYDMAEYLKLEFMKETGFAHMRICDGVGSYLQMCGLLAKFSLVRETAKAP 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02313 332 FunFam Replication factor C subunit 4 172 235 - -
Vivi1g02313 332 CDD HLD_clamp_RFC 171 233 - -
Vivi1g02313 332 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 15 316 - -
Vivi1g02313 332 Gene3D - 7 171 IPR027417 -
Vivi1g02313 332 Gene3D - 172 235 - -
Vivi1g02313 332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 233 IPR027417 -
Vivi1g02313 332 FunFam replication factor C subunit 2 236 328 - -
Vivi1g02313 332 SUPERFAMILY post-AAA+ oligomerization domain-like 235 326 IPR008921 GO:0003677|GO:0006260
Vivi1g02313 332 Pfam Replication factor C C-terminal domain 236 321 IPR013748 -
Vivi1g02313 332 Gene3D - 236 328 - -
Vivi1g02313 332 SMART AAA_5 46 172 IPR003593 GO:0016887
Vivi1g02313 332 FunFam Replication factor C subunit 4 8 171 - -
Vivi1g02313 332 Pfam ATPase family associated with various cellular activities (AAA) 50 168 IPR003959 GO:0005524|GO:0016887
Vivi1g02313 332 CDD AAA 29 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02313 Vivi-Chr1 48913230 48919684 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02313 12 332 Core DNA Replication Machinery Family AT1G63160 92.835 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02313 K10755 - gmx:100781364 619.002