Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02312 ATGGCCACGACAACCGCGGATCCGACGCCGTTGATCGGAAGTTCCTCCGACGAGTCAAACTCCGGGCGGCGAATTCTCCGTACGCCGAGTCTCCGTCAAGCGGCGCGGTTTTTAAGACAAGCGAGTGGGCGGAGGCTGATGCGCGAGCCGTCGATGATGGTGAGGGAGACCGCGGCGGAGCAATTGGAAGAGAGACAAAGCGATTGGGCTTATTCGAAGCCGGTGGTGATCCTTGACATTTTATGGAACTTGGCGTTCATTATTGTGGCTGCTACTGTGATGATTTTGAGCCGGGATGAAAATCCCAGTACGCCTCTTAGGTTGTGGATTTTAGGGTATGCGCTACAGTGTGTGCTTCATACTGTGTGTGTTTGTTTTGAGTATAGGAGAAGGGTGAGGATGCGGGAACAGGCGGATACAAATGGTGGTGGTAGCGCGGTTGGGAGTGGTGGTAGTGGGGATTTGGGATTTGGTTCAATGGATGGTTCTGGACATTATGTGAATGTATCGCAATATGGGGATGATGGTTCTACAAGTTGGCCAAAGCATTTGGAATCAGCCAACACAATGTTTTCTTTTATTTGGTGGGTCATTGGATTCTATTGGGTATCAGCGGATGGTCATGATTTGATCAATGATTCTCCTATGCTTTACTGGTTATGTATTGTCTTCTTGGGGTTTGATGTTTTTTTTGTCGTTTTCTGTATTGCGCTGGCATGCATCATTGGTCTTGCTGTTTGCTGCTGTCTTCCGTGTATTATTGCGCTTCTGTATGCCGTTGCAGACCAGGAAGGGGCAACAAAAGAAGACATTGAGCAGTTATCAAAATTCAAATTCCAAAGAAAAAGTAAGGATAAGCTTGCTGGTAATACACAAGGACCTGTTGGAGGAATAATGACTGAATGTCGAGCTGATTCCCCAATTGAACATGTGCTTGCTGATGAGGATGCGGAATGTTGCATCTGCCTTTCTGCCTATGATGATGGTGTTGAACTAAGACAACTTCCTTGTGGTCACCATTTTCACTGTGGCTGTGTGGACAAATGGCTGCACATTAATGCGACTTGCCCCCTCTGCAAGTATGACATTTTGAAAAGTAGCACCTATGGTCGAGAGGAAGTGTAG 1125 0.472 MATTTADPTPLIGSSSDESNSGRRILRTPSLRQAARFLRQASGRRLMREPSMMVRETAAEQLEERQSDWAYSKPVVILDILWNLAFIIVAATVMILSRDENPSTPLRLWILGYALQCVLHTVCVCFEYRRRVRMREQADTNGGGSAVGSGGSGDLGFGSMDGSGHYVNVSQYGDDGSTSWPKHLESANTMFSFIWWVIGFYWVSADGHDLINDSPMLYWLCIVFLGFDVFFVVFCIALACIIGLAVCCCLPCIIALLYAVADQEGATKEDIEQLSKFKFQRKSKDKLAGNTQGPVGGIMTECRADSPIEHVLADEDAECCICLSAYDDGVELRQLPCGHHFHCGCVDKWLHINATCPLCKYDILKSSTYGREEV 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02312 374 FunFam E3 ubiquitin-protein ligase At1g12760 305 370 - -
Vivi1g02312 374 CDD RING-H2_RNF6-like 318 360 - -
Vivi1g02312 374 ProSiteProfiles Zinc finger RING-type profile. 319 360 IPR001841 -
Vivi1g02312 374 Pfam Ring finger domain 318 360 IPR001841 -
Vivi1g02312 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 372 IPR013083 -
Vivi1g02312 374 PANTHER TARGET OF ERK KINASE MPK-1 42 365 - -
Vivi1g02312 374 MobiDBLite consensus disorder prediction 1 25 - -
Vivi1g02312 374 SMART ring_2 319 359 IPR001841 -
Vivi1g02312 374 SUPERFAMILY RING/U-box 309 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02312 Vivi-Chr1 48900994 48905918 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02312 9 367 C3H Transcription Factor Family AT1G68070 46.154 1.90e-111 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02312 - - gmx:100779757 605.134