Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02310 ATGGCCACGACAACCGCGGATCCGACGCCGTTGATCGGAAGTTCCTCCGACGAGTCAAACTCCGGGCGGCGAATTCTCCGTACGCCGAGTCTCCGTCAAGCGGCGCGGTTTTTAAGACAAGCGAGTGGGCGGAGGCTGATGCGCGAGCCGTCGATGATGGTGAGGGAGACCGCGGCGGAGCAATTGGAAGAGAGACAAAGCGATTGGGCTTATTCGAAGCCGGTGGTGATCCTTGACATTTTATGGAACTTGGCGTTCATTATTGTGGCTGCTACTGTGATGATTTTGAGCCGGGATGAAAATCCCAGTACGCCTCTTAGGTTGTGGATTTTAGGGTATGCGCTACAGTGTGTGCTTCATACTGTGTGTGTTTGTTTTGAGTATAGGAGAAGGGTGAGGATGCGGGAACAGGCGGATACAAATGGTGGTGGTAGCGCGGTTGGGAGTGGTGGTAGTGGGGATTTGGGATTTGGTTCAATGGATGGTTCTGGACATTATGTGAATGTATCGCAATATGGGGATGATGGTTCTACAAGTAGTTGGCCAAAGCATTTGGAATCAGCCAACACAATGTTTTCTTTTATTTGGTGGGTCATTGGATTCTATTGGGTATCAGCGGATGGTCATGATTTGATCAATGATTCTCCTATGCTTTACTGGTTATGTATTGTCTTCTTGGGGTTTGATGTTTTTTTTGTCGTTTTCTGTATTGCGCTGGCATGCATCATTGGTCTTGCTGTTTGCTGCTGTCTTCCGTGTATTATTGCGCTTCTGTATGCCGTTGCAGACCAGGCAAGGGCAACAAAAGAAGACATTGAGCAGTTATCAAAATTCAAATTCCAAAGAAAAAGTAAGGATAAGCTTGCTGGTAATACACAAGGACCTGTTGGAGGAATAATGACTGAATGTCGAGCTGATTCCCCAATTGAACATGTGCTTGCTGATGAGGATGCGGAATGTTGCATCTGCCTTTCTGCCTATGATGATGGTGTTGAACTAAGACAACTTCCTTGTGGTCACCATTTTCACTGTGGCTGTGTGGACAAATGGCTGCACATTAATGCGACTTGCCCCCTCTGCAAGTATGACATTTTGAAAAGTAGCACCTATGGTCGAGAGGAAGTGTAG 1128 0.4716 MATTTADPTPLIGSSSDESNSGRRILRTPSLRQAARFLRQASGRRLMREPSMMVRETAAEQLEERQSDWAYSKPVVILDILWNLAFIIVAATVMILSRDENPSTPLRLWILGYALQCVLHTVCVCFEYRRRVRMREQADTNGGGSAVGSGGSGDLGFGSMDGSGHYVNVSQYGDDGSTSSWPKHLESANTMFSFIWWVIGFYWVSADGHDLINDSPMLYWLCIVFLGFDVFFVVFCIALACIIGLAVCCCLPCIIALLYAVADQARATKEDIEQLSKFKFQRKSKDKLAGNTQGPVGGIMTECRADSPIEHVLADEDAECCICLSAYDDGVELRQLPCGHHFHCGCVDKWLHINATCPLCKYDILKSSTYGREEV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02310 375 FunFam E3 ubiquitin-protein ligase At1g12760 306 371 - -
Vivi1g02310 375 Pfam Ring finger domain 319 361 IPR001841 -
Vivi1g02310 375 CDD RING-H2_RNF6-like 319 361 - -
Vivi1g02310 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 373 IPR013083 -
Vivi1g02310 375 PANTHER TARGET OF ERK KINASE MPK-1 42 366 - -
Vivi1g02310 375 ProSiteProfiles Zinc finger RING-type profile. 320 361 IPR001841 -
Vivi1g02310 375 MobiDBLite consensus disorder prediction 1 25 - -
Vivi1g02310 375 SMART ring_2 320 360 IPR001841 -
Vivi1g02310 375 SUPERFAMILY RING/U-box 310 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02310 Vivi-Chr1 48900994 48905921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02310 9 368 C3H Transcription Factor Family AT1G68070 46.027 1.60e-109 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02310 - - gmx:100779757 598.971