Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02296 ATGGCCGCCACCACCACCACCAGCCTAGGCGGAGGCGCAGACGATCGAGTTCTCGCTACCGCTCACCAGATCTTGAAAAGCCTCAAAGCTCCCAAAGAGGATCGTGAAGACATGTTATTGATTTTCTCCTCCTTCGATAACCGTTTATCCGGCATCACTGACCTAATCAACGGCGACGATTCCAAATCCTCCGAAGACGAAGAGCTTGACCGTTTCGAAGCCGCGGAGAAAATCATACTCGATGACTCTTCTGTATACAGCGAGTCCTCTCGTCAATCGACTTCGCTTTTTGATCCTCCTAATGATCCGGTTGAGTATTTTCTCGCTGTTGATGAGATCATTCAGTGGATCGAACATTTCTCGATCTCGCCACCGGATCATTCGACCGAGAAAACTGATCGGATCATTTTGGATCGTGCCGAGAGCGCGATCCAATTAGCTATGTCGAGGCTGGAGGATGAGTTCCGTCATGTCCTGATTTGTAATACCATCCCGCCGAACGCTGTTAGCCGATGCAATACTAATCGGAGGAGTTCGCTGTCTTTCAGTTCGCAGGACGGTGGGATAGATGATAATTCTGGGAGTTTTGGTGAGGTAAGTGATGCTGGTTCTAATAGGTTTCATGAGCGTGGTGTTAGTATAGGAGATGATTTGTTTGTGGATTTAGTGCGTCCTGAATCGATTCTGAATCTTAAAGATATTATTGATAGGATGGTTAGGTCTGGTTATGAGAGGGAGTGTCTTCAGGTTTATAGTAGTGTTCGTCGTGATGCTTTGATTGAGTGTTTGACTATTTTGGGTGTTGAGAAGATGAGTATTGAAGAGGTTCAGAAGGTTGAGTGGAAGAGTTTGGATGAGAAAATGAGGCATTGGGTGCAAGCGGTGAAGGCTGTAGTTGGGATTTTGTTGAGTGGGGAGAAAAGGCTATGTGATAGTCTTTTTGGTGAATTCTATGATTTGAAGGATACATGTTTCAATGAAACTGCTAAAGCCTGTGTCATGATGTTGTTGAATTTTGGTGAAGCGGTTGCCATTTGTAAGAGGTCGCCTGAGAAGTTGTTTAGGATATTGGATATGTATGAGGCTTTGAGAGATGCTTTGCCTGATTTGGAGGAAATGGTTTTGGATGATCTTGTGATCACGGAGGCAAAGGGTGTGCTCAAAGGACTTGGTGAGGCTGTAAAAGGGACATTTGCTGAATTTGAGAATTGTATTCGGAACGAGACTTCTAGAAAGCCGGTTTTAACTGGGGATGTTCATCCTTTGCCTCGTTATGTTATGAATTACCTGAAACTGCTTGTTGATTATAGTGATACTATGGATTCGCTTTTGGAAATCACTGAAGAGGCTCTTTATCACTTTACAAATGATTTGGGGGGTGAGGTTTCACAGTTAGAGGATTTATCTCCTTTAGGCCGACAAATACTGTTGTTAATGTCCGAACTTGAGCACAATCTTGAAGAAAAAGCAAAACTTTATGAAGACATTGCATTACAGCAGGTGTTTTTGATGAACAATCTCTATTACCTAGTGCGCAAAGTGAAGGACTCGGAACTTAAAGATGTTTTGAGAGAAAGATGGATTCGTAAACGCAGCGTTAAGGTACGACAGTACTCCACAGGATACCTTAGAGTCTCTTGGAGCAAGGCCTTGTCGTGTTTGAAGGATGAAGGGATTGGAGGGAGCTCTAATAGTGCATCAAAGATGGCTTTGAAGGAGAGGTTCAAGAATTTCAATGCATGTTTTGAAGAAATATACAGGGTTCAGACAGGTTGGAAGGTGCCTGACGTGCAGCTTCGTGAAGAGATGCGAATTTCTATATCTGAGAGGGTGATTCCTGCATACCGCTCATTTGTTGGGAGATTTAGCTGTCAGCTGGAAGGAAGACATTCAAGCAAATACATTAAGTATTCGCCAGAGGATCTAGAGACTTTTTTATCAGATTTATTTGAAGGATCCCCTGCTGTATTGCATCACATAAGGAGAAAGAGTTCATAG 1998 0.4344 MAATTTTSLGGGADDRVLATAHQILKSLKAPKEDREDMLLIFSSFDNRLSGITDLINGDDSKSSEDEELDRFEAAEKIILDDSSVYSESSRQSTSLFDPPNDPVEYFLAVDEIIQWIEHFSISPPDHSTEKTDRIILDRAESAIQLAMSRLEDEFRHVLICNTIPPNAVSRCNTNRRSSLSFSSQDGGIDDNSGSFGEVSDAGSNRFHERGVSIGDDLFVDLVRPESILNLKDIIDRMVRSGYERECLQVYSSVRRDALIECLTILGVEKMSIEEVQKVEWKSLDEKMRHWVQAVKAVVGILLSGEKRLCDSLFGEFYDLKDTCFNETAKACVMMLLNFGEAVAICKRSPEKLFRILDMYEALRDALPDLEEMVLDDLVITEAKGVLKGLGEAVKGTFAEFENCIRNETSRKPVLTGDVHPLPRYVMNYLKLLVDYSDTMDSLLEITEEALYHFTNDLGGEVSQLEDLSPLGRQILLLMSELEHNLEEKAKLYEDIALQQVFLMNNLYYLVRKVKDSELKDVLRERWIRKRSVKVRQYSTGYLRVSWSKALSCLKDEGIGGSSNSASKMALKERFKNFNACFEEIYRVQTGWKVPDVQLREEMRISISERVIPAYRSFVGRFSCQLEGRHSSKYIKYSPEDLETFLSDLFEGSPAVLHHIRRKSS 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02296 665 Pfam Exo70 exocyst complex subunit 290 648 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vivi1g02296 665 Coils Coil 479 499 - -
Vivi1g02296 665 Gene3D Exocyst complex component Exo70 85 656 - -
Vivi1g02296 665 PANTHER EXOCYST COMPLEX PROTEIN EXO70 67 652 IPR004140 GO:0000145|GO:0006887
Vivi1g02296 665 SUPERFAMILY Cullin repeat-like 85 651 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02296 Vivi-Chr1 48511195 48513816 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02296 15 664 EXO70 exocyst subunit family AT5G50380 56.848 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02296 K07195 - gmx:100818693 1025