Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02293 ATGTCTAGGGCGCCTATTCTCATTAAGGACCTGGTCCAAGGGAACCAAGTTTGGAAAATGCACATCAGGGTCGTTGACATGTGGATTGTTACAGAAAAAGCTGGGTATCAACACCTAGAGTTGGTTATACAAGATGGAACGGGTGACCAAATACATGTGACAACTAGCCGTTGGGATTTTAAGGATTGGATAGAGCAGATCATAGAGCATGCAACATATTATCTGTATAATGGGGATCCTGTGGTTAATGATGGCCCTTATAAAGTGTGTTTGAACCCTCTCAAGCTTCTCTTTAATGGAGGAACTACTCTCACCAAGGTGGACATACCGGACATCCCACCGCACAAATTCAACTTCCATGCCATTGAAAACTTTCTCAATGGACATTTCAAGCCTGACATGCTCTATGATGTTATTGGTGTCTTGCAAGATGTTGTGAAGACACAAATGGGAGGTGGCGGTAAGAAGTCTTGTACCAATATCACCTTACGTGACGTTGGAGGAAATGCCATTGAGGTTGCTTTATGGGGTGATTTTAGCAAACAATTCATGGACTACACTACTATTGGCAAAAATGTTGGTCCCACAATTATCATTTTGACTCATGCTTGGTGTAAGCCAAATCCAGTATATGGATTACCAAGTCTATCTAATGCTTGGAATGGCTCGAAACTGCTGATTAACTTAGACCATCCACAAGTGGAAACCTTCAAAACCAGTTTTGGAGCAGCTGATTTGTCAAATGCATCCAATCTTTCTCTATCACTAACCTGTGATTCATCCATTCAATCCACAAACCAGAATTGGACTAGCCGTAATGAGGTCCGGACTATCCGTGACATTTTTGTAGGAGGAAAGGATTGTTTTGCAACTACTATTGGAACTACCAAACGATTCAAGGCTTCAAGGTTTGGATGGTTTTTTGAGTGTTGTCCAGGATGTAGGACTTCTATCAAGTCGGTTGGAGGGAAAGTTGAGTGTCACTGTGGAGTTAAAGATGTTGAACCAATTACTAAGTTCAAAATAGAAGTTGAAGTTGAATATGATGGCTTTGATGGAACCTTTGTCTTTTGGGATAAGGATTGTGTCCCATATACTAAACTGTCTGCTAAAGAGTTAAGGCAACTCATGATAGCGAATGGAGAAGACAACCCAAAAATATGGCCGACTCAAGTTGACATTTTGTTGAATAAGGAAATGGCGTTCCGTGTCAAATTTCAATCATCTTACAAACAATTTTCAATTGTGACAATACTTAATGAGGATAATGTTTACAACAAACTTAAGATCTACCTTACCCCGGATGAGCATACCTCAAGTGCTCCTGTTTTGGAGGTCTCCAATTCTGATCCAAATGATAATCCAACTGAACCTATTATGACACTTTCTGCTGAAGCTTCGATATCTCCTCAACCTTCGTCTGCTGCAAACCATGCTTGGAGTCCTTCTGCAAGCTCCAGTAGCACACCGGCCAAGAGGGGAGCTATAACAACATCAGTTAATGAGATGATTGAGGCTGAAGATCTCACTCCTAAACAATCTGCTACTAAGGCTAAGCCTGGAAGAAAGATCAAGCATATCAAGAAGGAGTAA 1593 0.4112 MSRAPILIKDLVQGNQVWKMHIRVVDMWIVTEKAGYQHLELVIQDGTGDQIHVTTSRWDFKDWIEQIIEHATYYLYNGDPVVNDGPYKVCLNPLKLLFNGGTTLTKVDIPDIPPHKFNFHAIENFLNGHFKPDMLYDVIGVLQDVVKTQMGGGGKKSCTNITLRDVGGNAIEVALWGDFSKQFMDYTTIGKNVGPTIIILTHAWCKPNPVYGLPSLSNAWNGSKLLINLDHPQVETFKTSFGAADLSNASNLSLSLTCDSSIQSTNQNWTSRNEVRTIRDIFVGGKDCFATTIGTTKRFKASRFGWFFECCPGCRTSIKSVGGKVECHCGVKDVEPITKFKIEVEVEYDGFDGTFVFWDKDCVPYTKLSAKELRQLMIANGEDNPKIWPTQVDILLNKEMAFRVKFQSSYKQFSIVTILNEDNVYNKLKIYLTPDEHTSSAPVLEVSNSDPNDNPTEPIMTLSAEASISPQPSSAANHAWSPSASSSSTPAKRGAITTSVNEMIEAEDLTPKQSATKAKPGRKIKHIKKE 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02293 530 SUPERFAMILY Nucleic acid-binding proteins 7 107 IPR012340 -
Vivi1g02293 530 MobiDBLite consensus disorder prediction 467 530 - -
Vivi1g02293 530 Gene3D - 6 108 IPR012340 -
Vivi1g02293 530 MobiDBLite consensus disorder prediction 467 496 - -
Vivi1g02293 530 CDD RPA1_DBD_A_like 19 103 - -
Vivi1g02293 530 Gene3D - 110 249 IPR012340 -
Vivi1g02293 530 SUPERFAMILY Nucleic acid-binding proteins 117 242 IPR012340 -
Vivi1g02293 530 Gene3D - 257 431 IPR012340 -
Vivi1g02293 530 SUPERFAMILY Nucleic acid-binding proteins 275 409 IPR012340 -
Vivi1g02293 530 MobiDBLite consensus disorder prediction 440 459 - -
Vivi1g02293 530 CDD RPA1_DBD_B_like 137 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02293 Vivi-Chr1 48476618 48478996 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02293 45 179 Core DNA Replication Machinery Family AT4G19130 23.571 7.94e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02293 - - vvo:131597380 967.992