Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02281 ATGGACTCTCCCTCCGGCGCGCACTTCTCCGGCTGGCGTCCTTCATCCATCTCTTCATCTTCTTCTCACGGCGTCTTCCTCATCGGAGTGTCCGGAGGTACTGCATCGGGGAAAACCACTATGTGTGACATGATTATTCAACAACTGCAAGATCATAGAGTTGTTCTAGTTAATCAGGATTCGTTTTATCGTGGTTTAACTAAAGATGAGTTGAAACGCGATCATGAGTATAATTTTGATCATCCTGATGCATTCGATACCGAGCAACTTGTAGAAACACTCATCAAACTTAAATCTGGGCAGTTTGTTCAATTTCCTGTTTATGATTTTAAGCTTCACCAGAGAGCTTCAAATAGATACCAACAGGTCAATGCATCTGAAGTAGTTATTTTGGAGGGTATATTGGTTTTTCACGAACAACGTGTCCGCGACTTGATGAATATGAAGATATTTGTTGATGCAGATCCTGATGTAAGGCTTTCCCGGAGAATAAGACGAGATACAGTTGAGAGGGGTAGAGATGTGCACTCTGTACTGGAACAGTATGCTAAATTTGTTAAGCCTGCCTTCGATGATTTTATTCTTCCATCCAAAAAGTATGCTGACATAATCATACCTCGTGGGGGAGATAATCGTGTAGCAATTGACTTGATCGTTCAACATATCCGCACTAAGCTTGGCCAACATAACCTCTGTAAGATATATCCAAATTTGCATGTGATACAGTCTACTTTCCAGACTAGAGGCATGCACACTCTTATTCGGGATACAGAAATATCCAAGCATGACTTTGTTTTTTATTCAGATCGGCTAATTCGTTTGGTAGTGGAACATGGTCTTGGTTACTTGCCATTTACAGAAAAACAAGTTATCACACCTACAGGATCAATTTATATTGGAGTTGATTTTTGTAAGAAACTGTGTGGAGTATCTGTTATTCGAAGTGGTGAAAGCATGGAAAATGCTTTGCGGGCATGCTGTAAAGGAATAAAAATAGGAAAAATTCTCATCCACCGTGGAGGTGATGAAACCCAGCTTATATATGAGAAGCTTCCTAAAGACATTTCAGAGAGACATGTTCTTCTCATGGACCCAGTACTTGGCACAGGTAACTCTGCGAGCCAAGCAATCGAGCTTCTTATTAAGAAAGGAGTTCCAGAGTCCCAGATAATATTCCTTAACCTTGTCTCTGCTCCTGAGGGAATACAGTATGTATGTAAACGTTTTCCACACATTAAAGTTGTTACTTCGGAGATTGAAGAAGGACTAAATGACCAGTTCCGTGTCGTGCCTGGGTTAGGAGAATTTGGTGACCGATATTTTGGTACAGATGAATCTTAG 1341 0.4087 MDSPSGAHFSGWRPSSISSSSSHGVFLIGVSGGTASGKTTMCDMIIQQLQDHRVVLVNQDSFYRGLTKDELKRDHEYNFDHPDAFDTEQLVETLIKLKSGQFVQFPVYDFKLHQRASNRYQQVNASEVVILEGILVFHEQRVRDLMNMKIFVDADPDVRLSRRIRRDTVERGRDVHSVLEQYAKFVKPAFDDFILPSKKYADIIIPRGGDNRVAIDLIVQHIRTKLGQHNLCKIYPNLHVIQSTFQTRGMHTLIRDTEISKHDFVFYSDRLIRLVVEHGLGYLPFTEKQVITPTGSIYIGVDFCKKLCGVSVIRSGESMENALRACCKGIKIGKILIHRGGDETQLIYEKLPKDISERHVLLMDPVLGTGNSASQAIELLIKKGVPESQIIFLNLVSAPEGIQYVCKRFPHIKVVTSEIEEGLNDQFRVVPGLGEFGDRYFGTDES 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02281 446 MobiDBLite consensus disorder prediction 1 20 - -
Vivi1g02281 446 PANTHER URIDINE KINASE 21 354 - -
Vivi1g02281 446 Pfam Phosphoribulokinase / Uridine kinase family 27 213 IPR006083 GO:0005524|GO:0016301
Vivi1g02281 446 Pfam Uracil phosphoribosyltransferase 243 443 - -
Vivi1g02281 446 NCBIfam uridine kinase 25 225 IPR000764 -
Vivi1g02281 446 ProSiteProfiles UvrC family, homology region profile. 113 214 IPR001162 GO:0009381
Vivi1g02281 446 SUPERFAMILY PRTase-like 228 444 IPR029057 -
Vivi1g02281 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 218 IPR027417 -
Vivi1g02281 446 Gene3D - 229 443 IPR029057 -
Vivi1g02281 446 Gene3D - 23 228 IPR027417 -
Vivi1g02281 446 PRINTS Uridine kinase signature 25 42 - -
Vivi1g02281 446 PRINTS Uridine kinase signature 193 206 - -
Vivi1g02281 446 PRINTS Uridine kinase signature 100 115 - -
Vivi1g02281 446 PRINTS Uridine kinase signature 55 66 - -
Vivi1g02281 446 PRINTS Uridine kinase signature 157 167 - -
Vivi1g02281 446 PRINTS Uridine kinase signature 171 182 - -
Vivi1g02281 446 FunFam Uridine kinase 229 443 - -
Vivi1g02281 446 CDD UMPK 27 225 IPR000764 -
Vivi1g02281 446 FunFam Uridine kinase 22 228 - -
Vivi1g02281 446 CDD PRTases_typeI 298 416 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02281 Vivi-Chr1 48160521 48197157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02281 1 445 PRT Gene Family AT3G27190 75.424 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02281 K00876 - gmx:100816209 775.007