Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02271 ATGGTTACTTCTAATTCTCTTTCCCTCTCTACTCACACTCTCCTTTTCCATAGCAGACATCGTCTTCACCCTACAAGGAACCGTTCCTCTCGTTACTCGTTTCCCTCCAATGCTCTCCCAAATATTGATGTAGCCAAAGTACTGCAAAGAAGATCAAGAAGAATAGAAGGTCCTAAAAAAAACATGGAAGATTCTGTTCAACGCAGGATGGAGCAATTTTACGAAGGATCAGATGGGCCACCTCTTCGCGTTCTTCCTATTGGTGGATTGGGTGAAATTGGAATGAATTGCATGCTTGTAGGGAACCATGATCGATGTATCCTCATTGACGCTGGAGTCATGTTCCCAGACTATGATGAGCTTGGGGTCCAAAAGATTATACCTGACACAACGTTTATTAAAAAATGGAGCCACAAAATTGAAGCAGTTATTATAACACACGGTCATGAAGATCATATTGGTGCATTGCCTTGGGTCATCCCAGTGTTGGATTCTCAAACACCAATTTTTGCATCGTCGTTTACAATGGAGCTTATAAGAAAACGTTTGAAGGATCATGGTATTTTTGTTCCATCCCGACTAAAAGTATTTAGAACAAGGAAGAAGTTTGTAGCTGGGCCATTTGAGATAGAGCCTATCAGAGTGAGCCATTCTATTCCGGATTGCTGTGGATTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCATACTGGGGATTGGAAGATCGATGAAACACCATTAGATGGTAAAGTTTTTGACCGTGAAGCTCTAGAGGAACTCTCCAAAGAAGGAGTCACATTGATGATGAGCGATTCAACAAATGTACAATCACCTGGAAGGACAATGAGCGAGTCTGTCGTAGCTGATGCATTATTGAGGCATATTTCAGCTGCCAAAGGAAGGGTTATAACAACCCAGTTTTCTTCAAATATTAATCGTCTTGGAAGTGTTAAAGCCGCTGCTGATTTGACTGGCCGAAAGTTGGTGTTTGCCGGCATGTCTTTAAGGACATATTTGGATGCAGCTTGGAAGGATGGAAAGTCTCCAATTGATCCATCCACTTTGGTGAAACTAGAGGATATTGATGTTTATGCGCCTAAGGATTTGCTGATCGTGACTACGGGTTCTCAAGCAGAACCGCGTGCTTCCTTAAATCTTGCATCATATGGAAATAGTCATGCTTTAAAACTGACAAAGGAAGACAGTCTGTTGTATTCTGCTAAGATTATCCCCGGTAACGAGTCTCGTGTTATGGAAATGCTAAACCGAATATCAGAGATTGGATCAACAATAGTCATGGGGAATAAAGAATGTCTACACACATCTGGTCATGCGTATCGTGGTGAATTGGAGGAAGTGCTCAGAATTGTGAAGCCACAACATTTTCTCCCCATACACGGAGAACTCTTGTTCTTGAAGGAGCATGAGTTACTTGGAAAATCAACTGGCATTCAGCACACTGCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAACAGGAAAGTCCTTTCTAATGGATTTATTGCTCTTGGAAAAGAGAATTTGCAGTTGAAGTATAGTGATGGTGACAAAGCATTTGGTTCATCAAGTGAACTCTTCATTGATGAAAGATTGAGAATTGCATTAGACGGCATCATTGTGGTTAGCATGGAGGTATGCCGCCCTCACAGTTTAGACAGTTCAGTTGAAAACACCTTAAAAGGAAAAATAAGAATTACCACAAGATGCCTATGGCTTGACAAAGGGAAGCTGTTAGACGCACTCCATAAAGCTGCTCATGCTGCTCTTTCAAGCTGCCCTGTAAACTGCCCATTGTCTCACATGGAAAAAACTGTGTCTGAGATGTTAAGGAAAATGGTGAGGAAGTATAGTGGAAAGCGGCCAGACGTTATTGCAGTTGCTATAGAAAATCCTGTAGCTGTTCTTGCCACTGAGATAAACACAAGGTTGTCTGGAAAATCCTATGTGGGTGCGATATCGACTTTCAGAAGCGCGGTGCATCGACACGAGAGAGAAAACCAATCTACCAAAATGCAAATGAGAGATGATGATAATGATGTTGAAAGTCTTCTACTTAAGGAAGATGCTACTACCTCAAATAGAGCTGCAAGTAATTTCTCTGAAATAGAGGATGGTCCTGAAGATGCTGAAACCAAATCAGTGAAGAGAAACAAATGGAAAGAGGAGGAAGTTAAGAAGTTGATCGGTGTGCGCAGGGAATTTGAAGACATATTTCAATTAGTGAGGGGAAATAATGTCTTCTGGGAAGAAATATCCAAGAATTTGTTGGCTTATGGTATCAACAAAAATCCTGGGCAGTGTAGATCTATGTGGACATCTCTGTTACAGAAATATGAGGAGATTAAAAATGAGAACAGAGAGGAAAGATGGCTTTATCTGGAAGACATGGAAAGGGTTTTGTCCGTTATCGAGGCACCAGCAAAAATATGA 2463 0.4117 MVTSNSLSLSTHTLLFHSRHRLHPTRNRSSRYSFPSNALPNIDVAKVLQRRSRRIEGPKKNMEDSVQRRMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRCILIDAGVMFPDYDELGVQKIIPDTTFIKKWSHKIEAVIITHGHEDHIGALPWVIPVLDSQTPIFASSFTMELIRKRLKDHGIFVPSRLKVFRTRKKFVAGPFEIEPIRVSHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVQSPGRTMSESVVADALLRHISAAKGRVITTQFSSNINRLGSVKAAADLTGRKLVFAGMSLRTYLDAAWKDGKSPIDPSTLVKLEDIDVYAPKDLLIVTTGSQAEPRASLNLASYGNSHALKLTKEDSLLYSAKIIPGNESRVMEMLNRISEIGSTIVMGNKECLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIQHTAVIKNGEMLGVSHLRNRKVLSNGFIALGKENLQLKYSDGDKAFGSSSELFIDERLRIALDGIIVVSMEVCRPHSLDSSVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLSHMEKTVSEMLRKMVRKYSGKRPDVIAVAIENPVAVLATEINTRLSGKSYVGAISTFRSAVHRHERENQSTKMQMRDDDNDVESLLLKEDATTSNRAASNFSEIEDGPEDAETKSVKRNKWKEEEVKKLIGVRREFEDIFQLVRGNNVFWEEISKNLLAYGINKNPGQCRSMWTSLLQKYEEIKNENREERWLYLEDMERVLSVIEAPAKI 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02271 820 CDD GT1 728 793 - -
Vivi1g02271 820 SMART Lactamase_B_5a 94 291 IPR001279 -
Vivi1g02271 820 CDD RNaseJ_MBL-fold 85 496 - -
Vivi1g02271 820 Gene3D - 283 433 IPR042173 -
Vivi1g02271 820 Pfam Beta-lactamase superfamily domain 107 260 IPR001279 -
Vivi1g02271 820 SMART sant 726 788 IPR001005 -
Vivi1g02271 820 Gene3D - 730 791 - -
Vivi1g02271 820 Gene3D - 86 498 IPR036866 -
Vivi1g02271 820 ProSiteProfiles Myb-like domain profile. 722 786 IPR001005 -
Vivi1g02271 820 Pfam Myb/SANT-like DNA-binding domain 727 809 IPR044822 -
Vivi1g02271 820 PANTHER RIBONUCLEASE J 1 692 - -
Vivi1g02271 820 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 437 475 IPR011108 -
Vivi1g02271 820 SUPERFAMILY Metallo-hydrolase/oxidoreductase 82 496 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02271 Vivi-Chr1 47990098 48002521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02271 714 811 Trihelix Transcription Factor Family AT1G13450 28.155 1.78e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi1g02271 Lactamase_B_2 1.6e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02271 - - cam:101513472 1313.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02271 1 47990098 48002521 Vivi3g04562 3 82715791 82725823 PCT