Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02267 ATGGCGGCAGGGCGACAAAGTGTTTTGGGGAAGAGGGAATCTTACAAGCATGATTCTGTCAAGGAATTTGTGTATTGTAAGTATGATGATTCTTCTGCAAAAGAAGATAGAGAAGAAGGTGAGATCCTTGTTGATGGGGATGAAGTTTTACCACCGTCAGAAAAGAGAAGAAAATTCTCTCCCATCGTTTGGGATCTGGCAGAGAAGAAGGCGAAGATCTCTTCCAAAGATGGGGTCAAGCACGTTGCTGAGTCTCTATATAGATCACCTGTTGATGAACGAAGTCCTGAAGGTAAAGGTGTTTTGAGTGAGTCTTCGCTGAATTCCTCTTGTGTTGTTGATGAAAGTGAGATGCAGGGGTGGAACATCACAAAGTCTAAATGGGCTTCTGATGATCTATCACCTATGGGTGATGATGATAAATACACGCATGATAAAAGAAGTTCAAGTTTAGAAGTTGGTGGTTCTTCAGGTAGCACAATCACTGGATCTGATATTGATGATGAGGCTAGTGATTCTCCGTCAGATTCGTTTGAAAATAGTGATATGATGCATGTGCAGAGAGGGTTTAATATGTGTCAGAGTTGCAGAACTGTGTCCGAGTTTGAAATGATTAAGAAAATAAATGAAGGAACTTATGGTGTTGTCTATAAAGCTAAGGATAAGATGACTGGAGAAATTGTAGCATTAAAGAAGGTGAAGATGGAGAAGGAAAGAGAGGGCTTTCCATTGTCAGCCTTGAGAGAAATGAATATTCTCTTGTCTTTAGATCATCCCTCTATTGTTGATGTTAAAGAGGTAGTGGTGGATGATGATGATAGGGATGATGGTACTTATATGGTAATGGAGCATATGCAGTATGATCTCAAACAATTAATGGAGGCTAGGAACCAGCCTTTTAGTTTGGGTGAAATAAAATCTTTCATGAAGCAACTTCTCGAAGGTGTCAAGTATCTCCATGATAACTGGATTCTCCATAGAGATTTGAAGACATCTAACATTCTAATGAATAAAGAAGGGCATCTGAAAATATGTGACTTTGGAATGTCAAGGCAGTACGGGAGTCCGCTTAAGCCATATACTTCTCTTGTCGTTACATTATGGTACAGAGCCCCTGAACTTTTATTGGGCGCTAAAAAATACTCCAAAGCAATTGATATGTGGTCATTGGGCTGTATAATGGCTGAATTATTTTCCAGGGAGCCTCTTTTCAGGGGTAAAACTGAAATTGAACAACTTGATAAGATTTTTCGAACCCTTGGTACACCCGATGAGAAGATATGGCCAGGATTTTCCAAATTGCCTGGATCTAAAGCAAATTTTGTCAAGCAACGGTGTAGTATGCTAAGGATGAAGTTTCCAGCTGCATCTTTCACTGGTTTGCCAGTTTTATCCGAGTCGGGATTTGACTTGTTGAGTAAGCTCCTAGCTTATGACCCTGACAAGAGAATATCTGCTGAGGCTGCTCTGCAACATGATTGGTTTCAATGA 1491 0.4024 MAAGRQSVLGKRESYKHDSVKEFVYCKYDDSSAKEDREEGEILVDGDEVLPPSEKRRKFSPIVWDLAEKKAKISSKDGVKHVAESLYRSPVDERSPEGKGVLSESSLNSSCVVDESEMQGWNITKSKWASDDLSPMGDDDKYTHDKRSSSLEVGGSSGSTITGSDIDDEASDSPSDSFENSDMMHVQRGFNMCQSCRTVSEFEMIKKINEGTYGVVYKAKDKMTGEIVALKKVKMEKEREGFPLSALREMNILLSLDHPSIVDVKEVVVDDDDRDDGTYMVMEHMQYDLKQLMEARNQPFSLGEIKSFMKQLLEGVKYLHDNWILHRDLKTSNILMNKEGHLKICDFGMSRQYGSPLKPYTSLVVTLWYRAPELLLGAKKYSKAIDMWSLGCIMAELFSREPLFRGKTEIEQLDKIFRTLGTPDEKIWPGFSKLPGSKANFVKQRCSMLRMKFPAASFTGLPVLSESGFDLLSKLLAYDPDKRISAEAALQHDWFQ 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02267 496 Gene3D Transferase(Phosphotransferase) domain 1 287 496 - -
Vivi1g02267 496 Pfam Protein kinase domain 202 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02267 496 SUPERFAMILY Protein kinase-like (PK-like) 194 496 IPR011009 -
Vivi1g02267 496 MobiDBLite consensus disorder prediction 86 109 - -
Vivi1g02267 496 MobiDBLite consensus disorder prediction 128 181 - -
Vivi1g02267 496 ProSiteProfiles Protein kinase domain profile. 202 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02267 496 SMART serkin_6 202 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02267 496 MobiDBLite consensus disorder prediction 149 168 - -
Vivi1g02267 496 Gene3D Phosphorylase Kinase; domain 1 191 286 - -
Vivi1g02267 496 FunFam Cyclin-dependent kinase G-2 287 496 - -
Vivi1g02267 496 PANTHER CELL DIVISION PROTEIN KINASE 200 495 - -
Vivi1g02267 496 FunFam cyclin-dependent kinase G-2 isoform X1 187 286 - -
Vivi1g02267 496 CDD STKc_CDC2L1 196 495 IPR045267 GO:0004674|GO:0005524|GO:0006468
Vivi1g02267 496 MobiDBLite consensus disorder prediction 132 148 - -
Vivi1g02267 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 324 336 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02267 Vivi-Chr1 47906926 47910303 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02267 197 495 Core Cell Cycle Gene Families AT5G10270 47.756 3.56e-89 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Vivi1g02267 Pkinase 2.7e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02267 K08818 - gmx:100788840 584.719