Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02257 ATGTCACCTTCACTTTATTATCCTGTTACTACTACCTTCAAAAACGAGGTAGAGTATCTTGACAATGATGAAAATTCATTAATGGGTTGTTATGCTTCTTTGTATCCAAATTTGCCTATTTTGGAAAACAGTGCTACTTCATCATGGGTTCTTCCTTTTCCTGATCATGAAACTGAAACCATTAGGGATAACAAGAAGGCGAAGAGATCGACGGTAACTATCCCTATTTGGTTTGCGAATTTCAGCAGCCATAGTAATAGTTTCTTCAACAGTATAAACAGTAGCAGCAGTGTGAGTAGCATTCCAAGGCTTCATTTTAGAGATCACATAAGGACTTATAAGCAAAGATATTTTGCTGCTGAAGCTGTTGAAGAAGCTGCAGAAGAGAGTTTCAACTATAGTAACTGTGAGGCTGAAGAAGATGGTTCATGTGCTGATGGAATGAGACTAGTTCAGCTTCTGATTGCATGTGCTGAAGCGGTGGCGTGTCGGGACAAATCGCACGCTTCGGTTTTGTTATCTGAGCTTAAATCGAATGCTTTGGTGTTTGGATCGTCGTTCCAGAGAGTTGCTTCTTGTTTTGTTCAAGGATTGATAGAGAGACTAACTCTGATTCAACCAATTGGCAACAGTTCTGTTGGATTGGATGGGAAATCGATGATGAACATAATGGATGCAGCTTCAGAAGAAATGGAAGAAGCATTCAAGTTGGTTTATGAGATATGTCCACATATTCAGTTTGGACATTTTGTGGCTAATTCCATAATATTGGAAGCCTTTGAGGGTGAGAGTTTCGTCCATGTGGTTGACCTAGGTATGAGTCTAGGTCTACCACACGGACACCAATGGCGAGGACTAATTCAAAGCCTCGCGAATCGATCTGGAAGCCAACGTGTTATTCGTCGGCTTAGGATCACGGCGGTTGGTCTATGCGTTGCTAGAATCCAAGTCATTGGTGAAGAACTCTCAATTTACGCGAAAAACTTGGGGATTCATTTGGAGTTCTCAATTGTGGAGAAGAATTTGGAGAATCTGAAACCTGAGGACATAAAAGTGAATGAAAAAGAGGTTCTTGTGGTTAACAGCATTCTTCAACTGCACTGTGTTGTTAAAGAGAGCCGTGGCGCGTTGAATTCGGTTTTACAGATGATCCACGGCCTTTTGCCGAAAGTGTTGGTGATGGTTGAGCAAGATTCAGGTCACAATGGACCTTTTTTTCTTGGTAGGTTTATGGAATCATTGCACTACTATTCTGCTATTTTTGACTCATTGGATGCTATGCTACCAAAATATGATACCAAGAGGGCAAAAATGGAGCAGTTTTATTTTGCTGAGGAGATAAAGAACATTGTGAGCTGTGAAGGACCATTGAGGATGGAGAGGCATGAGAAAGTTGATCAATGGAGGAGGAGAATGAGTAGGGCTGGATTTCAAGGTTCACCTATTAAGATGGTGGTTCAAGCTAAGCAGTGGCTTTTGAAGAATAAGGTTTGTGATGGATATACTGTTGTGGAAGAGAAAGGGTGTTTGGTTCTTGGATGGAAATCAAAGCCTATTGTTGCAGTTTCTTGCTGGAAATGCTGA 1584 0.4116 MSPSLYYPVTTTFKNEVEYLDNDENSLMGCYASLYPNLPILENSATSSWVLPFPDHETETIRDNKKAKRSTVTIPIWFANFSSHSNSFFNSINSSSSVSSIPRLHFRDHIRTYKQRYFAAEAVEEAAEESFNYSNCEAEEDGSCADGMRLVQLLIACAEAVACRDKSHASVLLSELKSNALVFGSSFQRVASCFVQGLIERLTLIQPIGNSSVGLDGKSMMNIMDAASEEMEEAFKLVYEICPHIQFGHFVANSIILEAFEGESFVHVVDLGMSLGLPHGHQWRGLIQSLANRSGSQRVIRRLRITAVGLCVARIQVIGEELSIYAKNLGIHLEFSIVEKNLENLKPEDIKVNEKEVLVVNSILQLHCVVKESRGALNSVLQMIHGLLPKVLVMVEQDSGHNGPFFLGRFMESLHYYSAIFDSLDAMLPKYDTKRAKMEQFYFAEEIKNIVSCEGPLRMERHEKVDQWRRRMSRAGFQGSPIKMVVQAKQWLLKNKVCDGYTVVEEKGCLVLGWKSKPIVAVSCWKC 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02257 527 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 122 521 IPR005202 -
Vivi1g02257 527 Pfam GRAS domain family 150 526 IPR005202 -
Vivi1g02257 527 ProSiteProfiles GRAS family profile. 141 526 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02257 Vivi-Chr1 47512834 47514876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02257 147 526 GRAS Transcription Factor Family AT1G66350 36.979 4.96e-75 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi1g02257 GRAS 1.2e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02257 - - gmx:100815959 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02257 1 47512834 47514876 Vivi1g02257 1 47512834 47514876 ECH