Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02249 ATGGAACACTCTGAAATCGATTTTGTTGCTGCTGTTTCCACCGCCGAAGAACCCCGAAGCGGTTCCGAGGATCATTCTCCACCGTCAGATCTCAATCATACGGTTAAGGTTGATGATGATGCGCTTGCTGTAGAGCTTCATGAGAAGTTGGATTTGAAGGTTGAAGATGAAGAAGGGGGTGCTGAAAGTGAAGCTGAGGTTAAAGTTTCCGAGTTTAAAGACGGTGGAGAGTCTGTGAAGGATGAAAATGAAGAATCTGTTGAAGATGTAGTGTCTGTTAAGGGTGAAGAAAGGGTTGATGGAGATAGCAAGGGTTGGGATACTAATAGTTGGAATGAGAATGTGAATGAAGAGCTTGGTGGTGGTAGAGATGGTGCTGGTTATGGTGATGATGGTTATGGTGGTGGATATGGTTATGGGGATGGAGGTGAAAAGAAGGAAGATGATTATGGTGGTGGTTATGGGGATGGATATGATGCTGTTTATGGTTATGGTGATGGAGTTGAAAAGAAGGAAGGTAACAACAGTGATGGAAATCATCAGTTTCCTTTGAGGCCTGAAGCTGAAGATTGTTCGTTTTATATGAAGACTGGAAGTTGCAAGTTTGGAACCAACTGCAAGTTTAATCACCCCATTAGGAGGAAAAACCAGGCTGGAAGGGAGAAGGTGCGAGATAGAGAAGAACCTGCAGAGAACTCAGGCCAGACAGAATGCAAGTATTATCAAAGGTCTGGGGGTTGTAAGTTTGGAAAAGCTTGTAAGTTCAACCACACAAGAGGGTATGCAGCACCAATTTCAGAACTTAACTTTCTCGGCTTACCTATTCGTCTGGGAGAGAAAGAGTGCCCCTATTACATGCGTACTGGCTCTTGTAAGTTTGGATCAAACTGTAGGTTTAATCATCCTGATCCTACAACTGTGGGAGGAAGTGATCCTCAATCAGGATATGGTAATGGAGGGTCTGTTCCATTACGAGGTGTATCCCAACAATCTGCCTCTTCATGGTCTTCTTCATCAAGAAAGTTAAATGAAGCACCTTATGTGCCTATGATGATTCCGCCTACTCAAGGACTTGCTCCTCAAAGTCCTGATTGGAATGGATACCAGGCGCCTGTCTACTTATCTGAGAGGATCATGCACCCATCTTCTACATACGTCATGAACAACCCAACAATTGAAACAAATGTGTATGTGCCTCCTCAAAAGCAGATGCCATTTGAAGTGTATCCAGAAAGGCCTGGTGAACCTGAATGCAGCTTCTTCTTAAAAACTGGTGATTGCAAATTCAAGTCTAATTGTAAATTTCACCACCCAAAGAATAGGATGGCAAGGTTGCCTCCTTGCAATCTCAGTGACAAGGGTTTGCCTTTGAGACCTGACCAGAGTGTCTGCTCGCACTATAGTCGTTATGGAATTTGCAAATTTGGACCAGCTTGTAGATTTGATCACCCAGAAAGCGCACTTCCCTTGATGATGCCTGGACTCGGACAGCAATCCTATGTAAACCCGGCTAATGCTCAGATGGCTGGGATGGGTGGAAGTGCTGGTGACGTGACAATTCAGCAATCTGTGTAA 1575 0.4432 MEHSEIDFVAAVSTAEEPRSGSEDHSPPSDLNHTVKVDDDALAVELHEKLDLKVEDEEGGAESEAEVKVSEFKDGGESVKDENEESVEDVVSVKGEERVDGDSKGWDTNSWNENVNEELGGGRDGAGYGDDGYGGGYGYGDGGEKKEDDYGGGYGDGYDAVYGYGDGVEKKEGNNSDGNHQFPLRPEAEDCSFYMKTGSCKFGTNCKFNHPIRRKNQAGREKVRDREEPAENSGQTECKYYQRSGGCKFGKACKFNHTRGYAAPISELNFLGLPIRLGEKECPYYMRTGSCKFGSNCRFNHPDPTTVGGSDPQSGYGNGGSVPLRGVSQQSASSWSSSSRKLNEAPYVPMMIPPTQGLAPQSPDWNGYQAPVYLSERIMHPSSTYVMNNPTIETNVYVPPQKQMPFEVYPERPGEPECSFFLKTGDCKFKSNCKFHHPKNRMARLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACRFDHPESALPLMMPGLGQQSYVNPANAQMAGMGGSAGDVTIQQSV 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02249 524 ProSiteProfiles Zinc finger C3H1-type profile. 276 304 IPR000571 GO:0046872
Vivi1g02249 524 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872
Vivi1g02249 524 SUPERFAMILY CCCH zinc finger 186 213 IPR036855 GO:0046872
Vivi1g02249 524 ProSiteProfiles Zinc finger C3H1-type profile. 232 260 IPR000571 GO:0046872
Vivi1g02249 524 MobiDBLite consensus disorder prediction 18 35 - -
Vivi1g02249 524 Gene3D - 227 310 - -
Vivi1g02249 524 Gene3D - 410 492 - -
Vivi1g02249 524 PANTHER PROTEIN PHOSPHATASE RELATED 51 497 - -
Vivi1g02249 524 SUPERFAMILY CCCH zinc finger 236 259 IPR036855 GO:0046872
Vivi1g02249 524 MobiDBLite consensus disorder prediction 214 233 - -
Vivi1g02249 524 Gene3D - 166 221 - -
Vivi1g02249 524 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 414 439 IPR000571 GO:0046872
Vivi1g02249 524 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 189 211 IPR000571 GO:0046872
Vivi1g02249 524 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 302 IPR000571 GO:0046872
Vivi1g02249 524 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 460 485 IPR000571 GO:0046872
Vivi1g02249 524 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 235 257 IPR000571 GO:0046872
Vivi1g02249 524 SMART c3hfinal6 412 439 IPR000571 GO:0046872
Vivi1g02249 524 SMART c3hfinal6 458 485 IPR000571 GO:0046872
Vivi1g02249 524 SMART c3hfinal6 185 212 IPR000571 GO:0046872
Vivi1g02249 524 SMART c3hfinal6 232 259 IPR000571 GO:0046872
Vivi1g02249 524 SMART c3hfinal6 276 303 IPR000571 GO:0046872
Vivi1g02249 524 MobiDBLite consensus disorder prediction 213 234 - -
Vivi1g02249 524 MobiDBLite consensus disorder prediction 304 335 - -
Vivi1g02249 524 ProSiteProfiles Zinc finger C3H1-type profile. 412 440 IPR000571 GO:0046872
Vivi1g02249 524 ProSiteProfiles Zinc finger C3H1-type profile. 458 486 IPR000571 GO:0046872
Vivi1g02249 524 MobiDBLite consensus disorder prediction 63 104 - -
Vivi1g02249 524 MobiDBLite consensus disorder prediction 54 128 - -
Vivi1g02249 524 SUPERFAMILY CCCH zinc finger 277 303 IPR036855 GO:0046872
Vivi1g02249 524 SUPERFAMILY CCCH zinc finger 459 488 IPR036855 GO:0046872
Vivi1g02249 524 MobiDBLite consensus disorder prediction 1 35 - -
Vivi1g02249 524 SUPERFAMILY CCCH zinc finger 416 442 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02249 Vivi-Chr1 47414667 47418263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02249 182 520 C2H2 Transcription Factor Family AT3G02830 38.933 3.09e-75 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi1g02249 zf-CCCH 1.8e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02249 - - psat:127074023 886.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02249 1 47414667 47418263 Vivi3g04583 3 83093287 83096907 ECH
Vivi1g02249 1 47414667 47418263 Vivi1g02249 1 47414667 47418263 ECH
Vivi1g02249 1 47414667 47418263 Vivi3g04583 3 83093287 83096907 PCT