Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02248 ATGGCGAATTCTGAAGAGGTTTTCCCATGGCTAAAATCGCTTCCAGTAGCACCAGAGTATCGACCAACTTTAGCAGAGTTTCAAGATCCAATAGCTTACATTTTCAAGATCGAAAAAGAAGCATCCAAATATGGAATCTGCAAGATTATTCCACCGGTTCCACCATGTCCTAAGAAAACCGCTATTTCTAACCTGAACCGGTGTCAACCCCGGTTCACAACACGTCAACAACAGATCGGATTCTGTCCACGGCGGCCTCAGCCGGTTCGACGACCGGTCTGGCATAGTGGTAACCACTACTCGTTTCGCGAATTCGAAGCTAAGGCGAAGTCGTTTGAGAAAAGTTACTTCAAAAAGGGGAAGAAACTTGGTCAGTTTTCTCCTCTGGAAGTTGAAGCTATGTACTGGAAAGCTACTGCGGATAAGCCTTTTTGTGTGGAGTATGCGAACGACATGCCTGGTTCTGCTTTTGGGGAAGTGAACGACGGTGGTTACGGTGGTTTTGGGGGAGATGGTTTTTTAACGGTGGGTGAAACGGGTTGGAATATGAGAGGGGTTTCGAGGGCAAATGGGTCTTTGTTGAAGTTTATGAAGGAAGAGATACCTGGTGTTACTTCTCCTATGGTTTATGTTGCTATGTTGTTTAGTTGGTTTGCTTGGCATGTGGAGGATCATGATTTGCATAGCTTGAATTATCTTCATATGGGGGCTTCTAAGACTTGGTATGGTGTTCCTAGAGAGGCTGCTGTTGCTTTTGAGGATGTTGTTAGAGTTCATGGCTATGGAGGAGAGGTTAACCCTCTTGTTACTTTTGCTATTCTTGGGGAGAAAACTACAGTGATGTCTCCTGAAGTATTTGTTCAGGCAGGTGTTCCATGTTGCAGGTTAGTGCAAAATGCTGGGGAGTTTGTTGTGACATTTCCAAGAGCCTATCACACAGGATTCAATCACGGTTTTAATTGTGGAGAGGCAGCTAACATTGCAACACCTGAATGGTTGACCGTTGCTAAAGATGCTGCCATTAGGAGGGCTTCAATTAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGGTCTTGCTATGTGTTCTAGAATCCCTGGAGACATCAGCGTCGGACCAAGAAGTTCTCGACTTAAAGATAAAAAGAAGGGTGTAGGACAAACGGTAATTAAAGAACTATTTGCACAGGATGTGTTACAGAATAATGATCTGCTGCATGCCCTCGGCAAAGGATCTTCTGTAGTACTCCTTCCTCGTAGCTCTTCTGACTTCTCTGTTTACTCAAAATTACGCGTTGGATCTCAACAACAAAAGGTTGACACTGATTTTTCACTCAATGTGTGCAATTCTGAGGGAACGAATTCCTCAAAAAAATCCATTTCAGATGATCTAGTGTTCAACAGGAATCATGGAATCAAAAAAGTAAAAGGTTTTTCTTCTGTAAAAGAAAAATTCACTACCTTGTGTGAAAGGAACAGGGTTTGTTCATTTAGTGCAAATGGTGACATATGCACTTCAAGTTCTAAAACATTGCAAAGAGACACCGAAAAAGATACAAGTCAAGGAGATGGGTTAACAGACCAAAGACTATTCTCATGTGTCACATGTGGAATATTAAGTTTTTCTTGTGTTGCTATTGTACAGCCTAAAGAACCAGCAGCTAGATACCTTATGTCAGTTGATTGTAACTTCTTCAATGATTGGATAGTGGGTTCTGGAGTAACTAGAAATAAGTTTACTGCTTCCCATGAAGATGCAAACATTTCCAAGCAGAGCACATATACAGGATGGACAAAACAGAATGCCAGAAATGATTTATACGATGTTCCTGTTGAATCTGTTGAACAACAGACACAAATTGCTGATCAAAGTCATATGGAAGCTTCAAATGCTGTAACAGAAAACACGGCTCTTGCATTGTTGGCTATAGCATATGGAAATTTATCCGATTCCGAGGAAGAGGATCAAAGTGACTCAGATATTGCAGTTGATGGTGATGATTTAAACACGACGAACCCTCCATTAAGAAGTAAATCCCAGGAGAGACCTTGTTTGCCTTCTCAATTCCAAGATTGCCATGCTAGCCCAGTAACTATTAATAATTATGAGAGTTATATGCATAAGAAAGTCGAGCGCATTATGAGCCCTTTTGATCATTCTACCTTGAATTGTTCCGAGGATACTCTTACTGAAATGCCTTTGTTGGGCAAGACAGTGATTCCCATTGACAATAAAAATCTATCATCAGTGCCACCATCTGATGAAGATGCGTCTAGGATGCATGTCTTCTGTCTAGAGCATGCTGCAGAAGCAGAGCAGCAACTTCGCCCAATTGGAGGAGCGCATATATTGCTCCTATGTCATCCAGATTATCCGAAGATAGAGGCTGAAGCGAAGTTTGTGGCAGAAGAAACAGGGATTGATTATAAGTGGAAGAATACTGTATACAGGCATGCCAACAGGGAAGACGAGGAGAGGATTCAATTAGCTCTGGATAGTGAGGAAGCTATTTCTGGCAATAGTGACTGGGCTGTAAAGTTGGGAATCAATCTCTTTTATAGTGCCAATCTTAGCCGGTCTCCACTTTATAGTAAGCAGATGCCTTACAATTCTGTTCTGTATTATGCATTTGGTTGTAGCTCTCCGGTAAGCTCGCCCGCCGAGCCCAGTGTCTGTCAGAGAAGGACAAATAGGCTGAAAAAGGTAGTTGCTGGAAAGTGGTGCGGAAAAGTTTGGATGTCGAATCAGGTCCATCCCCTTTTAGCAAAAAGAGAGCTTGATGACTTTGAGAATGAGAAAAGCATACAACTGTGGCCATTAGTCGATGAGAACAATGAGAGACCAGAACGTTCACACAAAAGTAATACTACGAATAGAAAATATGGTCGGAAAAGGAAAGTGGCCGCAGAGAGTGAAGGAGATTGGGAAGGAAGTTTTTCTGAGGGGGATTGGCTTTCTGATAATTCAATTGAAGATAAATGCAATCAATCTCAAAGGAGGATTCTTGCAAGTAAGCGAACCAGGCATATTGAGGGACATGGCACTGCTTCAGAAGGGGATTATTCTCCTTTGCAGCTCCATAACATGCTTAAAAGCAAGCATACAAAATGCATGGAAAGTGATGCAGTTTCAGATGATTCGCTAGATGATAATACCCGCATACAACCTTGGAGGAATGCTATTTCGAAGAAAGCTAAATCTATTGACAGCGATATGGTTTCAGATGATACCATGGATTATGATTCTGATTGGCCACATAAGGAAGAGCTTAGTGACACGCAAAATGCCATATCAGAGGATTCATTGGGTGTTGGTTCTCTTCAACGGTATAGGAAGACTCCTAAAAGCAAGTATGACCAATCCACTGTTGAAGATGTGATTTCTGATGACCAAACAGAGGTTTATATTCAGAAGCAAAAACGCAGGGTATCTAAAAGCAGGCAACCCAAATATCTAATGGAAGAAGATGCAGTGAGATCTGATGATCAACTGGGGCACTGCATGCTGAAGCAACAGAAGAGGAGTCCTAAAAGCTGGCAGGACAATTACCCTGTTGAAGAGGATACTATATCTGATGACGAACCTGAATGCCGTTCTCGCAAGTATCAAAGAAGGGTTCCAAAAGACAAACAAGCCAAACCCATCGTTGGGGAAGATGTAACATGTGATGACCAGTTGGAGTGTCACATTCAGAAGCCCCGAAGAAGTATGCGAAGGAGCAAGAAAAATAAATATAGTGATGAAGAAAATATGGATGACTCTGCTGAAAGTGATTCTCATGTGCTGCATAAAACTCCTAAAAGGAAGCAAGCTAAATTCTCAAATGAAAACGATATAAACTCAGATGATCAGATGGAGGATGATTGTCATCAGCCACAAATGAGACCTCTTCGACGTAAGCAAACTAAATCACAAACTCTTCAACAAATGAAACAAGCTAACTCGTCTTGTGTGAGAAGCAAGCCATCTCGGCCTGTGAAACGTGATGCTCATTTGCTAACAAAATCAAAGGCTCCTCGGAAAATGAAGCAACAGCCTCTTGCGTGGAACGATCAATCAGTTAACTCCAAAGATGAAACTTCACAAATTGAAGACAATGAAACTAGAAGACCTCCCAGCATGCGCATTAGGAAAAGAGTCCAAAAAATTCAGAATGAATCCGAGGAGGAAACAAAAGAAAAAGAAACCAAAAAGAAAAAAGTGAAGACTGCAATAACTTCAAAGGTTTCAACTGGCCGTGTCATAGAGAAGGATGAGGAAGGAGAATACCAGTGTGACATTGAAGGGTGCACCATGAGTTTTTACTCTAAACAGGAGTTGATGCATCATAAGAAAAATATATGTCCTGTGAAAGGGTGTGGAAAGAAGTTTTTCTCACACAAATATCTGGTGCATCACCGCCGAGTTCATGAGGATGATCGCCCACTAAAGTGTCCTTGGAAGGGATGCAAGATGGCTTTCAAGTGGTCATGGGCTCGGACCGAACATATTCGAGTCCACACTGGTGCTCGTCCATATGTGTGTGCTGAGCCGGGGTGTGAACAAACGTTCAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAAACTGGTCATTCAGTAAAGAAAACTCGTAAATAG 4632 0.419 MANSEEVFPWLKSLPVAPEYRPTLAEFQDPIAYIFKIEKEASKYGICKIIPPVPPCPKKTAISNLNRCQPRFTTRQQQIGFCPRRPQPVRRPVWHSGNHYSFREFEAKAKSFEKSYFKKGKKLGQFSPLEVEAMYWKATADKPFCVEYANDMPGSAFGEVNDGGYGGFGGDGFLTVGETGWNMRGVSRANGSLLKFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGASKTWYGVPREAAVAFEDVVRVHGYGGEVNPLVTFAILGEKTTVMSPEVFVQAGVPCCRLVQNAGEFVVTFPRAYHTGFNHGFNCGEAANIATPEWLTVAKDAAIRRASINYPPMVSHFQLLYDLGLAMCSRIPGDISVGPRSSRLKDKKKGVGQTVIKELFAQDVLQNNDLLHALGKGSSVVLLPRSSSDFSVYSKLRVGSQQQKVDTDFSLNVCNSEGTNSSKKSISDDLVFNRNHGIKKVKGFSSVKEKFTTLCERNRVCSFSANGDICTSSSKTLQRDTEKDTSQGDGLTDQRLFSCVTCGILSFSCVAIVQPKEPAARYLMSVDCNFFNDWIVGSGVTRNKFTASHEDANISKQSTYTGWTKQNARNDLYDVPVESVEQQTQIADQSHMEASNAVTENTALALLAIAYGNLSDSEEEDQSDSDIAVDGDDLNTTNPPLRSKSQERPCLPSQFQDCHASPVTINNYESYMHKKVERIMSPFDHSTLNCSEDTLTEMPLLGKTVIPIDNKNLSSVPPSDEDASRMHVFCLEHAAEAEQQLRPIGGAHILLLCHPDYPKIEAEAKFVAEETGIDYKWKNTVYRHANREDEERIQLALDSEEAISGNSDWAVKLGINLFYSANLSRSPLYSKQMPYNSVLYYAFGCSSPVSSPAEPSVCQRRTNRLKKVVAGKWCGKVWMSNQVHPLLAKRELDDFENEKSIQLWPLVDENNERPERSHKSNTTNRKYGRKRKVAAESEGDWEGSFSEGDWLSDNSIEDKCNQSQRRILASKRTRHIEGHGTASEGDYSPLQLHNMLKSKHTKCMESDAVSDDSLDDNTRIQPWRNAISKKAKSIDSDMVSDDTMDYDSDWPHKEELSDTQNAISEDSLGVGSLQRYRKTPKSKYDQSTVEDVISDDQTEVYIQKQKRRVSKSRQPKYLMEEDAVRSDDQLGHCMLKQQKRSPKSWQDNYPVEEDTISDDEPECRSRKYQRRVPKDKQAKPIVGEDVTCDDQLECHIQKPRRSMRRSKKNKYSDEENMDDSAESDSHVLHKTPKRKQAKFSNENDINSDDQMEDDCHQPQMRPLRRKQTKSQTLQQMKQANSSCVRSKPSRPVKRDAHLLTKSKAPRKMKQQPLAWNDQSVNSKDETSQIEDNETRRPPSMRIRKRVQKIQNESEEETKEKETKKKKVKTAITSKVSTGRVIEKDEEGEYQCDIEGCTMSFYSKQELMHHKKNICPVKGCGKKFFSHKYLVHHRRVHEDDRPLKCPWKGCKMAFKWSWARTEHIRVHTGARPYVCAEPGCEQTFRFVSDFSRHKRKTGHSVKKTRK 1543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02248 1543 FunFam Probable lysine-specific demethylase ELF6 1477 1506 - -
Vivi1g02248 1543 ProSitePatterns Zinc finger C2H2 type domain signature. 1482 1504 IPR013087 -
Vivi1g02248 1543 MobiDBLite consensus disorder prediction 1069 1106 - -
Vivi1g02248 1543 SMART cupin_9 175 344 IPR003347 -
Vivi1g02248 1543 MobiDBLite consensus disorder prediction 1142 1216 - -
Vivi1g02248 1543 SUPERFAMILY Clavaminate synthase-like 191 348 - -
Vivi1g02248 1543 Gene3D Classic Zinc Finger 1448 1534 - -
Vivi1g02248 1543 Coils Coil 1377 1404 - -
Vivi1g02248 1543 MobiDBLite consensus disorder prediction 667 688 - -
Vivi1g02248 1543 MobiDBLite consensus disorder prediction 1197 1216 - -
Vivi1g02248 1543 Gene3D Cupin 10 348 - -
Vivi1g02248 1543 SUPERFAMILY beta-beta-alpha zinc fingers 1490 1534 IPR036236 -
Vivi1g02248 1543 MobiDBLite consensus disorder prediction 1362 1401 - -
Vivi1g02248 1543 MobiDBLite consensus disorder prediction 654 688 - -
Vivi1g02248 1543 SMART JmjN_1 16 57 IPR003349 -
Vivi1g02248 1543 MobiDBLite consensus disorder prediction 1235 1401 - -
Vivi1g02248 1543 Pfam JmjC domain, hydroxylase 208 326 IPR003347 -
Vivi1g02248 1543 MobiDBLite consensus disorder prediction 1151 1172 - -
Vivi1g02248 1543 ProSitePatterns Zinc finger C2H2 type domain signature. 1512 1536 IPR013087 -
Vivi1g02248 1543 ProSiteProfiles JmjC domain profile. 175 344 IPR003347 -
Vivi1g02248 1543 ProSiteProfiles Zinc finger C2H2 type domain profile. 1510 1541 IPR013087 -
Vivi1g02248 1543 MobiDBLite consensus disorder prediction 1245 1280 - -
Vivi1g02248 1543 ProSiteProfiles Zinc finger C2H2 type domain profile. 1450 1479 IPR013087 -
Vivi1g02248 1543 ProSiteProfiles JmjN domain profile. 17 58 IPR003349 -
Vivi1g02248 1543 MobiDBLite consensus disorder prediction 1069 1098 - -
Vivi1g02248 1543 MobiDBLite consensus disorder prediction 1302 1325 - -
Vivi1g02248 1543 MobiDBLite consensus disorder prediction 1326 1340 - -
Vivi1g02248 1543 Pfam jmjN domain 18 51 IPR003349 -
Vivi1g02248 1543 SMART c2h2final6 1450 1474 IPR013087 -
Vivi1g02248 1543 SMART c2h2final6 1427 1449 IPR013087 -
Vivi1g02248 1543 SMART c2h2final6 1510 1536 IPR013087 -
Vivi1g02248 1543 SMART c2h2final6 1480 1504 IPR013087 -
Vivi1g02248 1543 ProSitePatterns Zinc finger C2H2 type domain signature. 1452 1474 IPR013087 -
Vivi1g02248 1543 ProSiteProfiles Zinc finger C2H2 type domain profile. 1480 1509 IPR013087 -
Vivi1g02248 1543 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 1476 - -
Vivi1g02248 1543 MobiDBLite consensus disorder prediction 950 983 - -
Vivi1g02248 1543 SUPERFAMILY beta-beta-alpha zinc fingers 1451 1483 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02248 Vivi-Chr1 47394929 47403707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02248 335 1059 C2H2 Transcription Factor Family AT3G48430 44.220 1.02e-168 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g02248 JmjC 1.3e-37 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02248 - - gmx:100775813 1865.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02248 1 47394929 47403707 Vivi1g02248 1 47394929 47403707 ECH
Vivi1g02248 1 47394929 47403707 Vivi2g03862 2 150551298 150571083 PCT
Vivi3g04587 3 83178858 83186202 Vivi1g02248 1 47394929 47403707 PCT