Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02246 ATGGCGTCCAATGAAGGATTTCTGACTGAAGGACAGAGGGAAATGTTGAAAATTGCTAGTGAAAATGTGGAGAGTTTAGCGGCTTTATCGTCTTCGCCCAAGTCACCGTCGTCCTTGCTTGCTGATCATCATATCAAAGCTCCTGCTGGTGGTAAGGCTCAGACTGCTGGGATTGCTGTCAGGCATGTGCGGAGGTGTCACTCTGGGAAGTATGGGCGGGCGAAGAAAGATGGTGCTGGTGGTAAGGGCACCTGGGGAAAATTGCTGGACACAGAAATTGATTCTCACATAGACCGCAATGATCCAAATTATGACAGTGGAGAGGAACCCTATCAGCTGGTTGGAACTACTGTTACTGACCCCTTGGATGATTTCAAGAAAGCAGTGGCTTCCCTCATAGATGAATACTTCAGTAATGGGGATGTAGATTTGGCAGCATCTGACCTCAGAGAACTTGGCTCAAGTGAATATTATCCATACTTCATTAAGCGGCTTGTTTCCATGGCAATGGACAGGCATGATAAGGAGAAAGAGATGGCTTCTGTTCTGCTTTCAGCATTGTATGCTGATGTCATTAGTCCCACACAGATTAGGGATGGATTTTTCATGCTTATTGAATCTGCTGATGATCTTGCAGTGGATATCTTGGATGCAGTTGACATCCTTGCTTTATTCCTGGCACGTGCTGTTGTAGATGACATTCTTCCACCAGCCTTCCTTGCCAGGGCAAGGAAGGCTCTTCCAGAATCTTCCAAGGGAGTTCAGGTAATCCAGACTGCTGAGAAGAGTTATCTCTCAGCTCCACACCATGCAGAACTTGTGGAAAGGCGATGGGGTGGCAGCACTCACATTACTGTTGAAGAAGTTAAGAAAAAGATTGCTGATTTACTTAGAGAATATGCGGATAGCGGTGAGACAGTTGAAGCCTGTAGGTGTATACGTGAGTTGGGAGTTGCGTTCTTCCATCACGAAGTTGTGAAGAAGGCTCTGGTGCTTGCCATGGAGATTCCTTCATCAGAACCTCTACTGTTGAAGCTATTAAAAGAAGCAGCAGAAGAAGGACTGATTAGTTCCAGCCAAATGGTGAAAGGGTTTTCTAGATTGGCAGAAGGTCTAGATGATCTTGCTCTTGATATTCCATCAGCTAAAGCCTTGTTTCAGTCATTTGTCCCCAAGGCAATCTCTGAAGGATGGCTTGATGCCTCCTTTACCAATCCAGCTGGTGAAAATGGGGAATTTCAAGTTGAAGATGAGAAGGTGAGGAAGTACAAAAAGGAAGCTGTGACTATAATTCATGAGTACTTTCTCTCTGATGACATTCCTGAACTCATTCGAAGTCTAGAAGATCTTGGAGCACCTGAGTATAACTCAGTATTTTTGAAGAGGCTAATAACACTTGCTTTGGACCGAAAGAACAGAGAAAAGGAGATGGCATCTGTCCTACTGTCTGCACTTCATATAGAGATATTCTCAACGGAGGATATAGTTAATGGTTTTGTTATGCTTCTGGAAAACGCAGAAGATACAACACTGGATATTCTGGATGCTTCAAATGAGCTTGCTCTTTTCTTAGCTCGGGCTGTGATTGATGATGTGCTTGCCCCATTGAATTTGGATGAAATTAACAGCAGGCTACCACCAAAAAGCAGTGGTAGTGAAACTGTGCGTATGGCTCGAACACTTGTTTCTGCTCGTCATGCAGGTGAAAGGCTATTGAGATGCTGGGGTGGAGGAACTGGATGGGCCGTGGAGGACGCTAAGGACAAGATCATGAAGCTCTTGGAGGAATACGAAAGTGGTGGGGTTGTCAGTGAAGCATGCCAATGTATCCGTGACTTGGGAATGCCTTTCTTTAACCACGAGGTAGTGAAGAAAGCTTTGGTTATGGCCATGGAGAAGCAGAATGATAGGCTGCTAGATCTGCTGCAGGAATGCTTTAGTGAAGGCCTTATCACCACCAATCAGATGACTAAAGGGTTCACCCGAATTAAGGATGGTCTTGATGATCTGGCTCTGGACATTCCAAATGCGAAGGAAAAATTTGCTTTCTATGTGGAGCATGCCCAGACCAAGGGATGGCTTCTACCATCATTTGATCCCTCTGCCACAGATGTCTAA 2118 0.4514 MASNEGFLTEGQREMLKIASENVESLAALSSSPKSPSSLLADHHIKAPAGGKAQTAGIAVRHVRRCHSGKYGRAKKDGAGGKGTWGKLLDTEIDSHIDRNDPNYDSGEEPYQLVGTTVTDPLDDFKKAVASLIDEYFSNGDVDLAASDLRELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPTQIRDGFFMLIESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALPESSKGVQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYADSGETVEACRCIRELGVAFFHHEVVKKALVLAMEIPSSEPLLLKLLKEAAEEGLISSSQMVKGFSRLAEGLDDLALDIPSAKALFQSFVPKAISEGWLDASFTNPAGENGEFQVEDEKVRKYKKEAVTIIHEYFLSDDIPELIRSLEDLGAPEYNSVFLKRLITLALDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLENAEDTTLDILDASNELALFLARAVIDDVLAPLNLDEINSRLPPKSSGSETVRMARTLVSARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKQNDRLLDLLQECFSEGLITTNQMTKGFTRIKDGLDDLALDIPNAKEKFAFYVEHAQTKGWLLPSFDPSATDV 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02246 705 Coils Coil 286 306 - -
Vivi1g02246 705 Gene3D - 573 701 - -
Vivi1g02246 705 Gene3D - 275 407 - -
Vivi1g02246 705 FunFam programmed cell death protein 4 116 267 - -
Vivi1g02246 705 FunFam programmed cell death protein 4 412 566 - -
Vivi1g02246 705 ProSiteProfiles MI domain profile. 585 704 IPR003891 -
Vivi1g02246 705 SUPERFAMILY ARM repeat 582 698 IPR016024 -
Vivi1g02246 705 ProSiteProfiles MI domain profile. 124 245 IPR003891 -
Vivi1g02246 705 SMART ma3_7 586 695 IPR003891 -
Vivi1g02246 705 SMART ma3_7 125 236 IPR003891 -
Vivi1g02246 705 SMART ma3_7 289 400 IPR003891 -
Vivi1g02246 705 SMART ma3_7 423 534 IPR003891 -
Vivi1g02246 705 SUPERFAMILY ARM repeat 420 578 IPR016024 -
Vivi1g02246 705 Gene3D - 117 265 - -
Vivi1g02246 705 Gene3D - 412 566 - -
Vivi1g02246 705 SUPERFAMILY ARM repeat 123 282 IPR016024 -
Vivi1g02246 705 Pfam MA3 domain 424 533 IPR003891 -
Vivi1g02246 705 Pfam MA3 domain 125 236 IPR003891 -
Vivi1g02246 705 Pfam MA3 domain 587 694 IPR003891 -
Vivi1g02246 705 Pfam MA3 domain 289 400 IPR003891 -
Vivi1g02246 705 SUPERFAMILY ARM repeat 285 407 IPR016024 -
Vivi1g02246 705 ProSiteProfiles MI domain profile. 422 543 IPR003891 -
Vivi1g02246 705 ProSiteProfiles MI domain profile. 288 409 IPR003891 -
Vivi1g02246 705 PANTHER PROGRAMMED CELL DEATH 4 3 699 IPR039778 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02246 Vivi-Chr1 47360072 47364494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02246 589 685 Eukaryotic Initiation Factors Gene Family AT5G57870 32.000 1.91e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02246 - - gmx:100809081 1201.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02246 1 47360072 47364494 Vivi1g02246 1 47360072 47364494 ECH