Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02242 ATGGATGGTAGGAGGCATTCTGTTGATGTTCCTATTTCCAAAACTCTTGTAGCATTGAGGAGAGTGAGGTCATTGAGGGATCCTTCAACAACAAATGGTATAAGCAAGCTCTCTCCTTTGATTGATAATGAGCATTGGGAAAATGGGGTTTCTCTGAGGTTTCTTGATGCTCCTTATGCATGTGAGTCTGATGATAATGGTTGTTTAAGGTCAAAGGGGTTAGATGATGGATTGGTTTACTCTAATCCTAAGCAGCAAGGTGTTTTCGGAAATAAATCGCCGAAAGAAAGCTGTTGTAGTAACCATGAAGTTAAAGGATTGGATTTGGCTTCTGTGGTTCCTTCTAGTAATCATTTGAAGGAAGGAGAATCATACTATTTGTCGACTGCGTTGTCGTCGAAGTTAGGGAGAATAGATAACTCAAAATTGACTAGGAAGTTTATGCGAAAGAATCAAGTGAAGCCGTTTGAGTTGATGGGTGATAATGTAAAAAGTGTTGAGAGTCCATGTCTTTCGGTTCGTGATGCTATGTCAGCTTATAGTGCCTCAACACAAACACCTCGAGATGTTGATGATGTTTTAGTTGATTACAATGGATGTGGAATAAGCTGTTGTTGGTCGAAGTCACCGAGGTTTAGAGACTCGAATCATTATTCTGAAATGGAAGAACTTCCCTTGATGTTGCAGCGTGTTAATGAGACAGATCTTTATGGACATAAAAGCATGAGACACATTGGTGGTGAGATTAGTCCAATGTTTGAAACTCCAAGGAGTTTATCTATGAAATTTAGGCCGAAAACTTTTGATGATTTGGTCGGACAAAATGTGGTTGGGAAGTCACTTTTGGGTGCTATCTCTAGAGGAAGGATAGCGTCGTTTTATCTCTTCCACGGTCCTCGTGGCACGGGAAAAACCTCTGCATCGAGGATATTTGCTGCTGCACTGAATTGCCTCTCGCCCGACGAGCAAAGGCCGTGTGGTTTGTGTAGAGAATGTGTTTTATTTTTTTCAGGAAGAAGTAAAGATGTTAAGGAAGTTGACTCTCTAAGAATTAACCGTTCGGACAAGATTAAATCCCTCGTTAAGAACGCATGCACGACAGCTCCAGATTTGTCGCGTTTTAAGGTGTTCATTATCGATGAGTGCCAGTTATTGAATAAGGAAACATGGGGGACTCTTTTGAATAGCTTAGGGAGTGTTTCTCAACATGTGGTTTTTATGATGATCACTCCTGATTTGGATAAGCTTCCACGAAGCGCGGTTTCTCGGGCTCAGAGGTATCACTTTACTAAGATTAAAGATGCCGACATTGCAAGCAGATTGAAAAGAATTTGTGCTGAAGAGGGTCTTGAATCTGAGCAAAATGCTTTGAATTTCATTGCTGCTAAATCCTGTGGCTCTCTTAGGGATGCAGAAATGATGCTTGATCAGCTAAGTTTGCTTGGTAAAAAAGTCACAATTTCCTTAGTCTATGAACTTACTGGTGTCATTTCTGATGATGAATTGCTTGATTTGCTGGACCTGTCTTTATCATCCGACACTACAAATACGGTTATAAGAGCTCGGGAGTTGTTGAGATCAAGAATAGATCCTTTACAACTTACATCTCAGCTGGCGAATCTTATTATGGACATTCTTGCAGGGAAATGTGAACTTGGTGGCTCGGAGATCAGACGGAAATTTTCTGATCGACATCTTTCCGAAGCAAACACGCATAAACTTAATCATGCATTAAGAATACTTTCTGAAACTGAGAAGCAGTTGAGAATTTCTAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTTCAGTTAAGCTCTATAGAATATTCATCTCTAGATACAAATGATACCAAGTTGTGTGTGACTGCTGCATCCAATAGAGATGGTGATTTATGCAGTACTTCGTCTACAGGTGAAAGTTTGAAGCATCTCACTACAGGTAAGTGCGATGAGAAGTCATATAAAGTAGAAGTTCAAGAGGATGACAAGGTAGCGTTAGACTCGATATGGTATAAAGCTACGGACATATGTCAATCTAGAAGGCTCAAAGCTTTTCTCAGAAAGCAAGGGAAGTTATCTTCGGTTTGTATTAATCAAGGTCTTGCAGTTGTGGAGTTGGAATTCCACCACCGTGTCGATGTAGCTAAAGCTGAAAAGTCATGGAAACAAATTGCAAGTTTCCTACAGTTCATATTAGGATGTAACATTGAGCTAAGAATCAATCATGTACCTTGTACTTCAGATTCTAAGTACGCAAAGTTGAAGAGATCTTCTTTCAATTTCTTTAACTGTTCGCGCAGAATTCTTCGAAAATCACTATCATCCGATGAACAAGGATGTGAATCAGACTATGCTGATTACACCTCTCAGAAGCCTATGATGGTGGACCAAAAAACTCTATCTCGCTCCTCTGATTGCGGATCTCGTGTTCCTCCCCTCGAGTCCTACCATGGAATGGAGGTTGTAAAAACTCTGAGAAGCTGCGAAGGGAATTTACTAAGCTCGGGGAAATTATTTTTGAATAGGATAATAGATCAAGAGATGACTCCAAGGATTTCTTTTTCTAGAGATGATTCTGTCAAGGAAGAAGAGTGCAATTATGAACATCTTGCTTCATCAACCGTTGATTTCGATAATAATCAGACGAACTGTTTTCCTCGAACGCTCTGGCTTCATAGAAAATTCTCTACTTCATATGCTTCAAAACAGAAGGATTTTTGTTTTATCAATCCCCAAGTACAAATGTACTGA 2754 0.3994 MDGRRHSVDVPISKTLVALRRVRSLRDPSTTNGISKLSPLIDNEHWENGVSLRFLDAPYACESDDNGCLRSKGLDDGLVYSNPKQQGVFGNKSPKESCCSNHEVKGLDLASVVPSSNHLKEGESYYLSTALSSKLGRIDNSKLTRKFMRKNQVKPFELMGDNVKSVESPCLSVRDAMSAYSASTQTPRDVDDVLVDYNGCGISCCWSKSPRFRDSNHYSEMEELPLMLQRVNETDLYGHKSMRHIGGEISPMFETPRSLSMKFRPKTFDDLVGQNVVGKSLLGAISRGRIASFYLFHGPRGTGKTSASRIFAAALNCLSPDEQRPCGLCRECVLFFSGRSKDVKEVDSLRINRSDKIKSLVKNACTTAPDLSRFKVFIIDECQLLNKETWGTLLNSLGSVSQHVVFMMITPDLDKLPRSAVSRAQRYHFTKIKDADIASRLKRICAEEGLESEQNALNFIAAKSCGSLRDAEMMLDQLSLLGKKVTISLVYELTGVISDDELLDLLDLSLSSDTTNTVIRARELLRSRIDPLQLTSQLANLIMDILAGKCELGGSEIRRKFSDRHLSEANTHKLNHALRILSETEKQLRISKNQTTWFTAALLQLSSIEYSSLDTNDTKLCVTAASNRDGDLCSTSSTGESLKHLTTGKCDEKSYKVEVQEDDKVALDSIWYKATDICQSRRLKAFLRKQGKLSSVCINQGLAVVELEFHHRVDVAKAEKSWKQIASFLQFILGCNIELRINHVPCTSDSKYAKLKRSSFNFFNCSRRILRKSLSSDEQGCESDYADYTSQKPMMVDQKTLSRSSDCGSRVPPLESYHGMEVVKTLRSCEGNLLSSGKLFLNRIIDQEMTPRISFSRDDSVKEEECNYEHLASSTVDFDNNQTNCFPRTLWLHRKFSTSYASKQKDFCFINPQVQMY 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02242 917 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 482 IPR027417 -
Vivi1g02242 917 CDD HLD_clamp_pol_III_gamma_tau 432 495 IPR045085 -
Vivi1g02242 917 Gene3D - 433 495 - -
Vivi1g02242 917 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 259 670 - -
Vivi1g02242 917 NCBIfam DNA polymerase III subunit gamma/tau 258 605 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vivi1g02242 917 FunFam DNA polymerase III subunit gamma/tau 433 495 - -
Vivi1g02242 917 Pfam DNA polymerase III, delta subunit 274 432 - -
Vivi1g02242 917 Gene3D - 253 430 IPR027417 -
Vivi1g02242 917 SUPERFAMILY post-AAA+ oligomerization domain-like 502 603 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02242 Vivi-Chr1 47267154 47271620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02242 249 497 Core DNA Replication Machinery Family AT1G21690 23.320 1.75e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02242 - - pcin:129308301 1118.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02242 1 47267154 47271620 Vivi1g02242 1 47267154 47271620 ECH