Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02239 ATGAATACATTCTCTTCTTCCATTTTCTTCCTCTTCTCTCTCCTCATACCTTCTCTCATTTCCTCTTCAACCATTCAAGACCCTCACTCTGTCACTCAAGAAGTTAACCGAAAAATCAATGGCTCATTAGCTCGGAGGAACTTGGGGTACTTATCATGTGGAAGTGGAAACCCAATTGATGATTGTTGGAGATGTGACCCAAACTGGGAAAACAACAGACAGAGACTAGCAGATTGCGCAATTGGTTTCGGCAAGAACGCTATCGGTGGCAAAAACGGTAAAATCTATGTTGTAACAGACTCCGGCAACGATGATCCCGTGACACCGAAGCCCGGTACACTCCGTTACGCCGTGATTCAGGAAGAACCGTTGTGGATTATATTTGCAAGAGACATGGTGATTCAACTAAAAGAAGAACTCATAATGAATTCTTTTAAGACAATTGATGGAAGAGGAGCAAGTGTTCACATTGCTGGTGGTCCTTGTATTACAATTCAGTATGTTACCAATGTTATCATACATGGTATTCATATTCATGACTGTAAACAAGGTGGGAATGCTATGGTGAGGGACTCCCCAGGGCATTACGGGTGGAGAACTGTATCGGACGGTGATGGTGTGTCGATTTTTGGTGGGAGTCATGTTTGGGTGGATCATTGTTCTTTGTCTAACTGTAATGATGGTTTGATTGATGCTATCCATGGGTCTACTGCTATTACTATTTCTAACAATTACATGACTCATCATGATAAAGTTATGCTTTTGGGTCATAGTGATAGTTATACTCAAGACAAGAACATGCAGGTTACTATTGCTTTTAATCACTTTGGTGAAGGCCTTGTTCAAAGAATGCCAAGATGTAGGCATGGTTATTTCCATGTGGTGAACAATGACTATACTCATTGGGAAATGTATGCTATTGGAGGAAGTGCCAATCCAACCATCAACAGTCAAGGAAACAGATTTGTTGCTCCTGATGACAGATTCAGCAAGGAGGTGACAAAGCATGAGGATGCACCGGATGGAGAATGGAAGGGATGGAATTGGAGATCGGACGGGGATTTAATGTTGAATGGCGCGTTTTTCACGCCATCGGGTGCAGGAAGAGGAGCCTCTTCAAGCTATGCAAGAGCATCGAGTTTAAGTGCACGACCATCTTCGTTAGTGGGAACAATAACAACGGGTGCTGGTGTACTCGGTTGTAAAAAGGGCTCTCGTTGTTGA 1224 0.4297 MNTFSSSIFFLFSLLIPSLISSSTIQDPHSVTQEVNRKINGSLARRNLGYLSCGSGNPIDDCWRCDPNWENNRQRLADCAIGFGKNAIGGKNGKIYVVTDSGNDDPVTPKPGTLRYAVIQEEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPGHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPDGEWKGWNWRSDGDLMLNGAFFTPSGAGRGASSSYARASSLSARPSSLVGTITTGAGVLGCKKGSRC 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02239 407 SUPERFAMILY Pectin lyase-like 33 401 IPR011050 -
Vivi1g02239 407 SMART amb_all 131 328 IPR002022 -
Vivi1g02239 407 Gene3D - 56 400 IPR012334 -
Vivi1g02239 407 PANTHER PECTATE LYASE 18-RELATED 23 405 IPR045032 GO:0030570
Vivi1g02239 407 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Vivi1g02239 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Vivi1g02239 407 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Vivi1g02239 407 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Vivi1g02239 407 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Vivi1g02239 407 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Vivi1g02239 407 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Vivi1g02239 407 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Vivi1g02239 407 FunFam Pectate lyase 56 400 - -
Vivi1g02239 407 Pfam Pectate lyase 139 322 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02239 Vivi-Chr1 47181530 47183493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02239 4 407 Polysaccharide Lyase AT5G63180 80.198 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02239 K01728 - gmx:100101868 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02239 1 47181530 47183493 Vivi3g04599 3 83420424 83422933 ECH
Vivi3g04599 3 83420424 83422933 Vivi1g02239 1 47181530 47183493 ECH
Vivi1g02239 1 47181530 47183493 Vivi1g02239 1 47181530 47183493 ECH
Vivi1g02239 1 47181530 47183493 Vivi3g04599 3 83420424 83422933 PCT