Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02238 ATGCAAGAAACCACACCAATTCACTTCCAAACCACTCGAGTCTTACCCGAATACGATGTGTTTATTCACACTTCCGATGGTACTCGCATTCCTGCACACACAAGCATTCTGGCATCAGTATCGCCGGTTCTCGAGAACATTCTAGATCAACCGCGTAAACACCGCAGCTCCGAACGAATAATCCAAATCCACGGCGTTCCTTCCACCGCCGCAACCGCTTTCGTCGGCTTCCTCTACTCATCCAGATGCACGGAGGATGAAATGGACAAATACGGAATCCATTTGTTAGCACTATCTCATGTCTACAACGTACCGCAACTGAAACAGATTTGCATCAAAGGCCTATCTCAACGGTTAACCGTAGAGAACGTGGTTGATGTACTCCAACTCGCGAGGCTCTGCGACGCACCGGATCTCCGTCTCCGATGTATGAAGCTTCTGACCAATCACTTCAACACCGTTCAGAAAACCGAAGGGTGGAAGTTTCTGATAAAACACGATCCATGGCTTGAACTCGATATTCTTCGGTTCATGGACGAAAGCGAAACGAGGAAAGAGAAATTGAAGAAGCATAAGGAGGAGTTTGGGTTGTATGCAGAACTGAGTGAGGCGATGGAGTGTTTGGAGCATATATGTACGGAGGGATGTATTGATGTTGGGCCGTATAATGTGGAGGTTGACAGAGAGAAGAAACCGTGTAAGAGATTCTCGACGTGTCAAGGGCTTCAGCTTCTGATTCGTCATTTTGCTATGTGTAAGAGGAGGGTGAAGGGAGGGTGCTTGAGATGCAAGCGTATGTGGCAGCTGTTTAGATTGCATTCGTATGTTTGTCAACAGAATGATTCTTGCAATGTTCCTCTTTGCAGGCAATTTCAATTGAGAATGGAGCAAGAGAAAAGGAAAGATGATCCCAAGTGGAAACTACTAGCAAAAAAGGTGGTCTCAGCAAAAGTGATGTTTTCCTTGTCTCTACCAAAGAGGAAAAGGGATGAAGAAATGAGAGTGACCATGGACAGCCGTGGAATCAGACATTTTGGCTACAATGAATATTGTAACAATCGATGTGTTTCATGTTGA 1077 0.455 MQETTPIHFQTTRVLPEYDVFIHTSDGTRIPAHTSILASVSPVLENILDQPRKHRSSERIIQIHGVPSTAATAFVGFLYSSRCTEDEMDKYGIHLLALSHVYNVPQLKQICIKGLSQRLTVENVVDVLQLARLCDAPDLRLRCMKLLTNHFNTVQKTEGWKFLIKHDPWLELDILRFMDESETRKEKLKKHKEEFGLYAELSEAMECLEHICTEGCIDVGPYNVEVDREKKPCKRFSTCQGLQLLIRHFAMCKRRVKGGCLRCKRMWQLFRLHSYVCQQNDSCNVPLCRQFQLRMEQEKRKDDPKWKLLAKKVVSAKVMFSLSLPKRKRDEEMRVTMDSRGIRHFGYNEYCNNRCVSC 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02238 358 SMART TAZ_2 198 289 IPR000197 -
Vivi1g02238 358 Gene3D TAZ domain 193 317 IPR035898 -
Vivi1g02238 358 SUPERFAMILY POZ domain 18 117 IPR011333 -
Vivi1g02238 358 SMART BTB_4 18 119 IPR000210 GO:0005515
Vivi1g02238 358 FunFam BTB/POZ and TAZ domain-containing protein 2 191 317 - -
Vivi1g02238 358 Gene3D Potassium Channel Kv1.1; Chain A 15 119 IPR011333 -
Vivi1g02238 358 FunFam BTB/POZ and TAZ domain-containing protein 2 120 190 - -
Vivi1g02238 358 Gene3D - 120 192 - -
Vivi1g02238 358 ProSiteProfiles BTB domain profile. 18 87 IPR000210 GO:0005515
Vivi1g02238 358 SUPERFAMILY TAZ domain 196 292 IPR035898 -
Vivi1g02238 358 Pfam TAZ zinc finger 202 288 IPR000197 -
Vivi1g02238 358 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 16 331 IPR044513 -
Vivi1g02238 358 Pfam BTB/POZ domain 19 117 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02238 Vivi-Chr1 47065595 47068675 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vivi1g02238 BTB 1.2e-12 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02238 - - cam:101496955 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02238 1 47065595 47068675 Vivi1g02238 1 47065595 47068675 ECH