Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02230 ATGTCGACTAGCACTGAAAATCTTGAGATTTTCGTTGGAAATTTGACTTCTGACACTGATGTTGAGAAATTGACCACACTTTTTGGACAGGCTGGGACTGTAGTGCATGCTGAGTTAATTACTCTTTGGGATACAGCCCTCAGGTTTGGAAGTGTAACTATGAGTACTGTTGAAGAAGTTGAGAAGGCTATTAAAAAGTTCGATGTCTATGGATTAAATGGAAATTATTTGAGTGTTAGTAAGTACGATCCAAGAAAATCACAACCCGATCTTCCAAAACGTCCACTAGCATTTGATTCGGCTTTTAGTCTCTACGTTTGTAACTTGACGCGGGAAACTGACCCTGCTAAGTTGGAGGAAATTTTCAGCAAATATGGTAAGGTTAAGAGTGTTGAGTTTGTCACCGACAGTTACGGTCGATCACGTGGTTATGGCTTTGTTACAATGTCCAGCAAGACTGAAATGGATGATGCCATTGCTGCTCTTGACCGTAAACTGGAAATGGGATCAAGAACAATGCATGTTGCTGAGTTACCACGTAACTTGTAA 549 0.4062 MSTSTENLEIFVGNLTSDTDVEKLTTLFGQAGTVVHAELITLWDTALRFGSVTMSTVEEVEKAIKKFDVYGLNGNYLSVSKYDPRKSQPDLPKRPLAFDSAFSLYVCNLTRETDPAKLEEIFSKYGKVKSVEFVTDSYGRSRGYGFVTMSSKTEMDDAIAALDRKLEMGSRTMHVAELPRNL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02230 182 Gene3D - 1 86 IPR012677 -
Vivi1g02230 182 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Vivi1g02230 182 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 172 IPR000504 GO:0003723
Vivi1g02230 182 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 77 IPR000504 GO:0003723
Vivi1g02230 182 PANTHER OS02G0815200 PROTEIN 5 175 - -
Vivi1g02230 182 SMART rrm1_1 9 80 IPR000504 GO:0003723
Vivi1g02230 182 SMART rrm1_1 103 176 IPR000504 GO:0003723
Vivi1g02230 182 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 84 IPR000504 GO:0003723
Vivi1g02230 182 SUPERFAMILY RNA-binding domain, RBD 88 176 IPR035979 GO:0003676
Vivi1g02230 182 CDD RRM_SF 104 175 - -
Vivi1g02230 182 Gene3D - 87 179 IPR012677 -
Vivi1g02230 182 SUPERFAMILY RNA-binding domain, RBD 5 92 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02230 Vivi-Chr1 46975271 46976476 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02230 2 176 Eukaryotic Initiation Factors Gene Family AT4G34110 24.865 5.73e-10 55.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02230 1 46975271 46976476 Vivi3g03995 3 69228281 69230161 ECH
Vivi1g02230 1 46975271 46976476 Vivi1g02230 1 46975271 46976476 ECH
Vivi1g02230 1 46975271 46976476 Vivi3g03995 3 69228281 69230161 PCT