Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02228 ATGTCTATCACTTCCTTCAAATCCCTCACAATGGCCGAATCATGTTTACTCTCCCAACCCTCCCTCTTCTACTCCAAAACCAAATCCCCATTCATCTCCAACTCCGCCAAGTCCTTCAAAATTCAAAACCCTACGTATAACTCTTCTAGGGTTTCACACTCTCTTTCCCTCAGTACTGGAAAGAGAAGAACCCGTTACTCTTCGTTGCTGACGTTTGTGGCTCAGACTTCGGATTGGGCTCAGCAGGAAGAGAAGGAAGATGGAGATACATGGGAGAATCAAGGTGAGCCTAAGTGGGGAAGTGAGACCGAAAGCAATGATGGTGATGGTGAGGTTGGGGGTTTCGGGGAGGTAGCGTCGGAGGAATTGAAGATTTTTGTTGGGAATTTGCCGTTTGATGTTGATAGTGAGAGATTGGCTGGGCTTTTTGAACAGACTCCCGGGACTGTTGAGGTTGCTGAGGTGATTTATAACAGGGAAACTGACAGAAGTCGTGGATTTGGATTTGTGACGATGAGTACTGCTGATGAAGTTGAGAGGGCTGTGAACAAGTACAGTGGCTATGAACTAGATGGAAGATTGTTGACAGTTAATAAAGCCGCTCCAAGAGGAGGACCAAGACCAGAGCGCCCACCACGTGCCTATGATTCCGCTCTACGAATCTATGTTGGTAACTTGCCATGGGATGTTGACAATGGTCGCTTGGAGCAACTTTTCAGCGAACATGGTAAGGTTGATAGTGCTCGTGTAGTCTATGACAGAGACACCGGCCGATCACGTGGGTTTGGCTTTGTTACAATGACCGATGAAGCTGAAATGAATGATGCCATTGCTGCTCTTGACGGTCAGAGCTTGAACGGGAGGGCGATCAGAGTGAATGTTGCTGAGGAAAGGCCTAGGCGTAACTTCTGA 912 0.477 MSITSFKSLTMAESCLLSQPSLFYSKTKSPFISNSAKSFKIQNPTYNSSRVSHSLSLSTGKRRTRYSSLLTFVAQTSDWAQQEEKEDGDTWENQGEPKWGSETESNDGDGEVGGFGEVASEELKIFVGNLPFDVDSERLAGLFEQTPGTVEVAEVIYNRETDRSRGFGFVTMSTADEVERAVNKYSGYELDGRLLTVNKAAPRGGPRPERPPRAYDSALRIYVGNLPWDVDNGRLEQLFSEHGKVDSARVVYDRDTGRSRGFGFVTMTDEAEMNDAIAALDGQSLNGRAIRVNVAEERPRRNF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02228 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 297 IPR000504 GO:0003723
Vivi1g02228 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 202 IPR000504 GO:0003723
Vivi1g02228 303 Gene3D - 208 302 IPR012677 -
Vivi1g02228 303 Gene3D - 71 207 IPR012677 -
Vivi1g02228 303 SMART rrm1_1 220 293 IPR000504 GO:0003723
Vivi1g02228 303 SMART rrm1_1 124 198 IPR000504 GO:0003723
Vivi1g02228 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 291 IPR000504 GO:0003723
Vivi1g02228 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 195 IPR000504 GO:0003723
Vivi1g02228 303 MobiDBLite consensus disorder prediction 79 114 - -
Vivi1g02228 303 FunFam 31 kDa ribonucleoprotein, chloroplastic 209 303 - -
Vivi1g02228 303 SUPERFAMILY RNA-binding domain, RBD 120 212 IPR035979 GO:0003676
Vivi1g02228 303 PANTHER OS02G0815200 PROTEIN 22 300 - -
Vivi1g02228 303 SUPERFAMILY RNA-binding domain, RBD 211 301 IPR035979 GO:0003676
Vivi1g02228 303 CDD RRM2_NsCP33_like 220 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02228 Vivi-Chr1 46964966 46967122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02228 125 301 Eukaryotic Initiation Factors Gene Family AT3G16380 31.892 3.01e-18 83.2