Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02211 ATGGGTGAAGGAACCTTTGGGCAGGTATTGGAATGCTGGGACAGAGAGAGGAAGGAAATGGTTGCCATAAAAATTGTCCGTGGAATTAAGAAGTATAGGGAAGCAGCCATGATAGAAATTGAGATGTTGCAACAGCTTGGTAAAAATGATATAGGAGGCAATCGTTGTGTGCAAATAAGGAACTGGTTTGACTATCGTAATCATATATGTATTGTTTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATTGCATTTATGCATGATTTGCGCATGATCCATACTGATTTGAAGCCTGAAAACATACTCCTTGTTTCACCAGACTATGTCAAAGTCCCTGACTATAAGATTTCATCTAGATCACCAAACTCATATTTCAAAAAAGTGCCCAAGTCTAGTGCTATCAAGGTTATTGATTTTGGAAGCACCACATATGAGCGTGTAGATCAAAGTTACATTGTATCAACTCGTCATTATAGAGCACCTGAAGTTATCCTTGGTCTTGGCTGGAGTCATCCGTGTGATATATGGAGTGTGGGGTGTATATTGGTTGAGTTATGCACGGGTGAAGCTTTATTCCAGACTCATGAAAATTTAGAGCACCTTGCCATGATGGAGAGGGTTCTCGGTCCACTACCAATGCATATGTTGAAAAAAGTCGACCGACATGCTGAGAAGTATGTCAGAAGAGGTAAATTAGACTGGCCAGTCGGTGCAACCTCAAGGGAGAGTATTAAAGCTGTAACTAAGCTTCCTAGATTACAGAACCTTATAATGCAGCATGTTGATCATTCAGCCGGTGACCTTGTACATCTTCTGCAAGGATTACTTAGATATGACCCTTTTGAAAGAATTACTGCCAAGGAAGCCCTGAGACATTCCTTTTTCATGAGGAGATCACATTAG 978 0.4039 MGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEMLQQLGKNDIGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSPDYVKVPDYKISSRSPNSYFKKVPKSSAIKVIDFGSTTYERVDQSYIVSTRHYRAPEVILGLGWSHPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPMHMLKKVDRHAEKYVRRGKLDWPVGATSRESIKAVTKLPRLQNLIMQHVDHSAGDLVHLLQGLLRYDPFERITAKEALRHSFFMRRSH 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02211 325 SMART serkin_6 2 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02211 325 ProSiteProfiles Protein kinase domain profile. 1 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02211 325 CDD PKc_CLK 1 320 - -
Vivi1g02211 325 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
Vivi1g02211 325 Pfam Protein kinase domain 1 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02211 325 SUPERFAMILY Protein kinase-like (PK-like) 2 321 IPR011009 -
Vivi1g02211 325 Gene3D Transferase(Phosphotransferase) domain 1 49 320 - -
Vivi1g02211 325 Gene3D Phosphorylase Kinase; domain 1 1 75 - -
Vivi1g02211 325 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 322 - -
Vivi1g02211 325 FunFam Serine/threonine-protein kinase AFC2 71 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02211 Vivi-Chr1 46479859 46483353 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02211 1 320 Core Cell Cycle Gene Families AT1G76540 25.680 2.74e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vivi1g02211 Pkinase 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02211 K08287 - gmx:100804452 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02211 1 46479859 46483353 Vivi1g02211 1 46479859 46483353 ECH