Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02210 ATGGAGATGGAACGCGTCTTCGAATTTCCTCATACTCACATGGATCGCCGCCCTAGAAAGAGAGCGAGGCTCGGCTGGGATGTTCCTGAGGTTCCTAAGGCTCAGGTAGGATTGTTTTTTGGACAAGATGTTGGGAATATTTCCAGCTATGCTCCTTCAGGGGTTTCTTCAGAACATACCACTAGTTCCCTACTTGTGAAGGGTGTTGCTCGAAATGGTTCACCCCCTTTGCGAGATGATGACAAAGATGGCCATTACACGTTTGCTGTTGGAGAAAATTTAACTGCCCGCTATAAGATACACAGCAAAATGGGTGAAGGAACCTTTGGGCAGGTATTGGAATGCTGGGACAGAGAGAGGAAGGAAATGGTTGCCATAAAAATTGTCCGTGGAATTAAGAAGTATAGGGAAGCAGCCATGATAGAAATTGAGATGTTGCAACAGCTTGGTAAAAATGATATAGGAGGCAATCGTTGTGTGCAAATAAGGAACTGGTTTGACTATCGTAATCATATATGTATTGTTTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATTGCATTTATGCATGATTTGCGCATGATCCATACTGATTTGAAGCCTGAAAACATACTCCTTGTTTCACCAGACTATGTCAAAGTCCCTGACTATAAGATTTCATCTAGATCACCAAACTCATATTTCAAAAAAGTGCCCAAGTCTAGTGCTATCAAGGTTATTGATTTTGGAAGCACCACATATGAGCGTGTAGATCAAAGTTACATTGTATCAACTCGTCATTATAGAGCACCTGAAGTTATCCTTGGTCTTGGCTGGAGTCATCCGTGTGATATATGGAGTGTGGGGTGTATATTGGTTGAGTTATGCACGGGTGAAGCTTTATTCCAGACTCATGAAAATTTAGAGCACCTTGCCATGATGGAGAGGGTTCTCGGTCCACTACCAATGCATATGTTGAAAAAAGTCGACCGACATGCTGAGAAGTATGTCAGAAGAGGTAAATTAGACTGGCCAGTCGGTGCAACCTCAAGGGAGAGTATTAAAGCTGTAACTAAGCTTCCTAGATTACAGAACCTTATAATGCAGCATGTTGATCATTCAGCCGGTGACCTTGTACATCTTCTGCAAGGATTACTTAGATATGACCCTTTTGAAAGAATTACTGCCAAGGAAGCCCTGAGACATTCCTTTTTCATGAGGAGATCACATTAG 1287 0.4196 MEMERVFEFPHTHMDRRPRKRARLGWDVPEVPKAQVGLFFGQDVGNISSYAPSGVSSEHTTSSLLVKGVARNGSPPLRDDDKDGHYTFAVGENLTARYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEMLQQLGKNDIGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSPDYVKVPDYKISSRSPNSYFKKVPKSSAIKVIDFGSTTYERVDQSYIVSTRHYRAPEVILGLGWSHPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPMHMLKKVDRHAEKYVRRGKLDWPVGATSRESIKAVTKLPRLQNLIMQHVDHSAGDLVHLLQGLLRYDPFERITAKEALRHSFFMRRSH 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02210 428 SUPERFAMILY Protein kinase-like (PK-like) 85 424 IPR011009 -
Vivi1g02210 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Vivi1g02210 428 FunFam Serine/threonine-protein kinase AFC2 174 423 - -
Vivi1g02210 428 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
Vivi1g02210 428 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 425 - -
Vivi1g02210 428 CDD PKc_CLK 85 423 - -
Vivi1g02210 428 Gene3D Transferase(Phosphotransferase) domain 1 152 423 - -
Vivi1g02210 428 ProSiteProfiles Protein kinase domain profile. 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02210 428 SMART serkin_6 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02210 428 FunFam Serine/threonine-protein kinase AFC2 85 178 - -
Vivi1g02210 428 Pfam Protein kinase domain 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02210 Vivi-Chr1 46479859 46483405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02210 263 423 EF-hand Containing Proteins AT5G22840 30.337 9.26e-16 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vivi1g02210 Pkinase 7.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02210 K08287 - gmx:100804452 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02210 1 46479859 46483405 Vivi1g02210 1 46479859 46483405 ECH