Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02188 ATGGAATCAAATTCCAAAAACACAACCAAGTTCCTCTTTAGCTACGGCGGTAAAATCCTCCCCCGCCACACCGACGGCAAGCTCCGCTACACCGGTGGCCACACTAGAGTCCTCGCGCTTTCTCTCCCCATTTCTTTCTCAGAGTTGATGGTGAAGTTTGTGGAATTATGCTGTTTATCAGTGACACTGAAGTGTCCTTTACCAAACGGAGATTTAGAGACATTGATTTCAATCACCAGCGACGAAGATCTGGAAAATATAATCGAAGAATACGATCGAGCTTCTTCGTCGTTACGTCATCCATTGAAGATAAGAGCCATTCTTTCACCTCCCAAATCTCTCAAGAAAGTATGTCCTCAACATTCTTCTTCGTCCAGCGCAACATACTCTCCCTCTGGTTCGCTTTACGGGTCTGCGGAATCACCGCCGTATGCGGCTGTTAATCGGCTGAATTGTTCGCCGGTTCCTCTAGGGTTTCCGATTGGTATTCGAAACGGGGCTGTGAAAGGTGGCTGTTACACAGGGCAATTACATGAAAGCCCTAGATTCCTTTATCGCTGCGGTAATAATTATTGTCAATGA 582 0.4639 MESNSKNTTKFLFSYGGKILPRHTDGKLRYTGGHTRVLALSLPISFSELMVKFVELCCLSVTLKCPLPNGDLETLISITSDEDLENIIEEYDRASSSLRHPLKIRAILSPPKSLKKVCPQHSSSSSATYSPSGSLYGSAESPPYAAVNRLNCSPVPLGFPIGIRNGAVKGGCYTGQLHESPRFLYRCGNNYCQ 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02188 193 SUPERFAMILY CAD & PB1 domains 25 113 - -
Vivi1g02188 193 SMART PB1_new 23 109 IPR000270 GO:0005515
Vivi1g02188 193 Gene3D - 27 107 - -
Vivi1g02188 193 PANTHER OS05G0427100 PROTEIN-RELATED 5 129 - -
Vivi1g02188 193 CDD PB1_UP2 14 108 - -
Vivi1g02188 193 Pfam PB1 domain 25 98 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02188 Vivi-Chr1 45928766 45929673 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02188 5 90 MAP Kinase Kinase Kinase AT2G35050 52.326 2.53e-23 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02188 - - mtr:25493721 258.455