Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02186 ATGAAATCAAATCCCAAGAAAACAACAAAGGTCCTCTTTAGCTACGGCGGTAAAATCCTCCCCCGCCACACCGACGGCAAGCTCCGCTACACCGGCGGCCACACCAGAGTCCTCGCGCTCTCTCTCCCCATTTCTTTCTCAGAGTTGATGGTGAAGTTTGTGGAATTATGCGGTTCATCTGTTACACTCAAGTGTCCTTTACCGAACGGAGATTTAGAGACATTGATTTCAATCACCAGCGACGAAGATCTAGAAAATATAATCGAAGAATACGATCGAGCTTCTTCGTCTTTACCACATCCTTTGAAGATTAGAGCCATTCTTTCACCTCCCATATCTCTCAAGAAAGTAACTCCTCCACAATCTTCTTCGTCCAGCGCAACATACTCTCCGTCCGGTTCGATTTACGGATCCTCGGAATCACTGAACCGGTCTAATTACTCACCGGTTTCTCTAGGGTTTTTTGGTATTCGAAATGGGGCTGTGAAAGGTGGTTGTTACACAGGGCAACTACATGGAAGCCCTAGATTGGTATATCGCTTCGGTAATAATTATTGTCAATGA 564 0.4557 MKSNPKKTTKVLFSYGGKILPRHTDGKLRYTGGHTRVLALSLPISFSELMVKFVELCGSSVTLKCPLPNGDLETLISITSDEDLENIIEEYDRASSSLPHPLKIRAILSPPISLKKVTPPQSSSSSATYSPSGSIYGSSESLNRSNYSPVSLGFFGIRNGAVKGGCYTGQLHGSPRLVYRFGNNYCQ 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02186 187 MobiDBLite consensus disorder prediction 116 141 - -
Vivi1g02186 187 SMART PB1_new 23 109 IPR000270 GO:0005515
Vivi1g02186 187 PANTHER OS05G0427100 PROTEIN-RELATED 5 126 - -
Vivi1g02186 187 Gene3D - 27 108 - -
Vivi1g02186 187 SUPERFAMILY CAD & PB1 domains 25 109 - -
Vivi1g02186 187 CDD PB1_UP2 14 108 - -
Vivi1g02186 187 Pfam PB1 domain 25 96 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02186 Vivi-Chr1 45911749 45912790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02186 9 90 MAP Kinase Kinase Kinase AT2G35050 51.220 5.92e-22 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02186 - - mtr:25493721 248.825