Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02162 ATGTTTCCTTCACTAGTTTCTGTTGCACCTAATTCTGTCATGGTTCTTGAGACAAATCTCGGAGAAAACTATGCCTCACAACAACCAATGCACTTGCAAGAAAACTACTTAAAACCAAGGATGAAAGATGAGCTTCCTAATTTTGATGCTCATTCCTCTCATGGCAACTTCTTGCAAGATTTTCACCATATTGATCAGTTTCACGTGCATGGTTCTTCGTCCTCCAATCATGTTTTTGGGGTCCAAACTCAAACTTTTGATCCTTTTGGGAATGAACAATGCGCAAATACAGGTTTTGAAGTTTATAGTGACAAGTCTTTTGCGGAGAACAATAATGGTGGTAATCAACATGCTCATTTTATTGATAATTTTCAATATGATGGTTATAGTTTGAATGTTCCTAGAAGGAATCATCTTGATCTTATGGTTGAAAACCAAAGCTATTTTCCATTTAATAATCCTTCGGAAACCAAACAGTTGAACTATGTTGTACCAGATGATGAAGTTTCAAGCATAGCACCAACAAGTTATTACCAAAGAGGTGATTTGAATCGAAACAACAGGCTACTATCTCCGACCACGAGAAGAGCGTTTAAAGCGAAGAAGAAATCAAGCATAGTGAAGGGGCAATGGACCGTCGATGAAGATAGAATGTTGATTCAAATGGTGGAACAATATGGAATGAGGAAGTGGTCTCATATTGCTCAGAGATTGCCTGGAAGAATAGGGAAACAGTGTAGAGAAAGATGGCATAACCATTTAAGGCCGGACATTAAGAAAGACATATGGACTGATGAAGAGGACAAGATATTGATCCAAGCTCATACTGAGATAGGAAATAAATGGGCAGAAATTGCGAAAAGATTAGCCGGAAGAACTGAAAACTCAATCAAAAACCATTGGAACGCAACAAAGAGAAGACAGTATTCGAAAAGAAAATGCCGCTCGAAGCATCCTAGAGGCACACTTCTGCAGGAATATATCAAGAGCTTGAACTTAGACCAAAACCCACCAAGAGACTTTCGAAAAAAATCTTCTTCTAATGCTAAGAAAACCATTACTTGCAGCACAAGCAAAGAAGCAATACAACAAAATCCTCAACCACAGATCATGAATCAGTTTTGTCCCAATGACCAATCAGTCCCGAACTACGAGTTTAATGATTTTTGTTTGGATGATAATTTGTTTGAAGAAGGGTGTGGTATTGATTCTCTGCTAGATGATATGGCAAGTGTTCCTACAATGGGTGAGAAAGAATTTGATGAAAAACTATGTGATAAGGGAGGTATACAAGTTGTTAATCTTGATGAACATCAATTTGAGACTGAGATTGAAGTTAAGAAGGAGATAGATTTGGTGGAGATGATATCTCAGGATATGACTCAGCAATATAGCAACTGCAAGAAAATTCAACACAATTTCAATAGAAGTGGCAATGGGGTGATTAAAGTTACTTGGAAACTGCCAGAAAGAGATTGGATATGCATAATGATAGGATTGTGCGGAAGAATCCAGATTCTTGCTACGGCATCATCAAGATATACTATTGAATTACGGGGAGTGTTAACCGGCTTATTGATAGCTCAGAAAAAAGGATACAAGAAGATCATTGTTCAAGTTGACAACAAACGTGTGGCTACGGAAATTCAGGATTCTACTTATCAACATAACCAGGGAGCCAATTTGCTGAGAAGAATCTGTGATGTGGGGAGCAGCTTGGAGGCAATGCGGATTGAGTATCAGTTTAGGAAAGCTAACAGATCTTTTGGCAAAACAAGGTAG 1782 0.3822 MFPSLVSVAPNSVMVLETNLGENYASQQPMHLQENYLKPRMKDELPNFDAHSSHGNFLQDFHHIDQFHVHGSSSSNHVFGVQTQTFDPFGNEQCANTGFEVYSDKSFAENNNGGNQHAHFIDNFQYDGYSLNVPRRNHLDLMVENQSYFPFNNPSETKQLNYVVPDDEVSSIAPTSYYQRGDLNRNNRLLSPTTRRAFKAKKKSSIVKGQWTVDEDRMLIQMVEQYGMRKWSHIAQRLPGRIGKQCRERWHNHLRPDIKKDIWTDEEDKILIQAHTEIGNKWAEIAKRLAGRTENSIKNHWNATKRRQYSKRKCRSKHPRGTLLQEYIKSLNLDQNPPRDFRKKSSSNAKKTITCSTSKEAIQQNPQPQIMNQFCPNDQSVPNYEFNDFCLDDNLFEEGCGIDSLLDDMASVPTMGEKEFDEKLCDKGGIQVVNLDEHQFETEIEVKKEIDLVEMISQDMTQQYSNCKKIQHNFNRSGNGVIKVTWKLPERDWICIMIGLCGRIQILATASSRYTIELRGVLTGLLIAQKKGYKKIIVQVDNKRVATEIQDSTYQHNQGANLLRRICDVGSSLEAMRIEYQFRKANRSFGKTR 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02162 593 PANTHER MYB PROTEIN-RELATED 191 353 - -
Vivi1g02162 593 Gene3D - 262 325 - -
Vivi1g02162 593 Pfam Reverse transcriptase-like 500 587 IPR002156 GO:0003676|GO:0004523
Vivi1g02162 593 CDD SANT 211 254 IPR001005 -
Vivi1g02162 593 Gene3D - 207 260 - -
Vivi1g02162 593 SUPERFAMILY Homeodomain-like 206 301 IPR009057 -
Vivi1g02162 593 ProSiteProfiles Myb-like domain profile. 203 254 IPR001005 -
Vivi1g02162 593 FunFam Transcription factor MYB119 261 325 - -
Vivi1g02162 593 CDD RNase_H_like 475 587 IPR044730 -
Vivi1g02162 593 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 309 IPR017930 -
Vivi1g02162 593 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 258 IPR017930 -
Vivi1g02162 593 FunFam Transcriptional activator Myb isoform A 207 260 - -
Vivi1g02162 593 Pfam Myb-like DNA-binding domain 263 302 IPR001005 -
Vivi1g02162 593 Pfam Myb-like DNA-binding domain 208 254 IPR001005 -
Vivi1g02162 593 ProSiteProfiles Myb-like domain profile. 255 305 IPR001005 -
Vivi1g02162 593 CDD SANT 263 305 IPR001005 -
Vivi1g02162 593 SMART sant 259 307 IPR001005 -
Vivi1g02162 593 SMART sant 207 256 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02162 Vivi-Chr1 45573345 45585336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02162 150 409 MYB Transcription Factor Family AT4G18770 54.044 2.76e-88 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi1g02162 RVT_3 2e-10 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02162 K09422 - gmx:100816653 577.785