Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02139 ATGCCTCTAAATCCATGGACCCTTTTTTTCTTATCCATTTTTCTATTACTTCCACACCATTCTTTTCTATCTTTGGCAGTGAACCAACAAGGAGAAGCTCTTCTTTCATGGAAAAGAAGTTTGAATGGATCCTTGGAGATGTTGAGTAACTGGGATCCAATTGAAGAGACACCGTGTAGCTGGTTTGGAGTGACTTGCAACTTGAAGAACCAAGTAGTAGAATTGGATATGAGGGATGTGGATTTGCTTGGAAAACTCCCAACAAATTTCTTCTCATTGTTTTCCTTGACAAGTCTTATCTTAACCGGAACGAATCTCACCGGTCCAATCCCAAAAGAACTAGGTGCTCTGGTTGAACTCAGCTACTTAGACTTGAGTGACAATGCATTGAGTGGCGAAATCCCGAGTGAAATCAGCTATTTGCCTAAACTCGAGGAACTTCATCTGAACTCAAACGAGCTCACGGGGTCGATACCGGTCACAATTGGGAACCTCACAAATTTGACAAAGTTGATCTTATACGACAATCAGCTGAGTGGCGAAATTCCCAATACAATTGGCAACATGAAGAGCCTTCAAGTGATAAGAGCGGGTGGAAACAAGAATCTAGAAGGACAATTACCGCAGGAAATCGGAAACTGTTCTAACTTGATCATGTTGGGTTTAGCAGAAACAAGTATCTCAGGTTTCATGCCACCAACTATTGGACTATTGAAGAAGCTTGAAACATTAGCCATTTACACTTCACTCCTCTCTGGCCAAATTCCCTCTGAAATTGGTGATTGCACACAGCTTCAAAACATTTACCTTTACGAAAACTCACTCACAGGATCCATTCCAACTAAACTGGGAAACCTTAAGAATCTCAGAAACCTGTTACTGTGGCAGAACAATTTAGTAGGCACCATTCCTCAAGAGATTGGAAACTGTCACCAATTATCAGTGATCGACGCGTCAGTAAATTCATTAACCGGAAGCATTCCTAGAAGCTTCGGGAACCTGACTTTGCTGGAAGAACTTCAATTGAGTGCGAATCAGATTTCTGGCGAGATACCAGGAGAATTAGGAAACTGTCAACAACTGACTCACATAGAGCTTGATAACAATCTTATATCTGGTACAATACCTTCCGAATTAGGAAACCTTGGGAATCTAACGTTGTTGTTTCTGTGGCATAATAAGTTATTAGGTAATATACCTTCCACTCTTTCCAATTGTCAAAACCTTGAAGCTATTGATCTGTCACAGAATGTGTTAACTGGTCCCATACCAGAAGGTATATTCCAGCTTCAGAATCTCAACAAGCTTTTGCTTCTATCTAATAATCTCTCCGGTAAAATTCCCTCTCAGATTGGAAATTGTTCTTCTCTTATTCGCTTTCGAGCCAACGACAATAACATTACTGGTACCATTCCTTCTGAGATTGGTAATCTTAAGAATTTGAACTTCCTTGACCTCGGGAACAATCGAATTTCTGGTGTTATCCCGGCGGAGATCTCTGGCTGCGGCAATCTCACTTTCTTGGACTTGCATTCGAATTTCATTGCCGGAAGCTTGCCAGAAAGTTTAAGTCAGCTTGTTTCACTTCAATTTCTTGATATCTCAGATAACATGCTTGAAGGCTCCCTGAGCCAATCTCTCGGCTCGCTCGCCGCACTTACTAAACTGGTTCTTCAGAATAATCGAATCTCCGGTTCGATTCCGACTAAACTCGGTTCATGTGTCAAGTTACAGTTATTGGACCTAAGCAACAATCAATTCTCCGGTAAAATCCCCGGTAGCATTGGTAACATTCCGGCTCTGGAAATAGCTCTGAATCTAAGCACAAACCAACTCACTGGCAACATTCCCCGCGAGTTTTCAGATTTAACTAAACTCGGAGTACTTGATCTATCTCACAACATTCTCACCGGAAATCTCGATTATCTTGCCACGTTAGAAAATCTTGTGGTCCTCAATATCTCCTCTAATAAATTCTCAGGCCGCGTTCCGAACACGCCGTTCTTCGAGAAACTTCCTTTAAACGTCCTCTCAGGAAACCCGTCGCTGTGCTTCGCCGGCAGCCGGTGCTACAACGAAGGTGCCGGAAAATCAGGTCGCCGTGCGAGGGAAGCGCGCGTGGTGATGGTTATTCTCCTAAGCATCGCGTGTGTTTTACTCATGGCGGCGCTGTACGTTGTCGTGGCAGCAAAACGACGCGGAGAGCAAGAAAACGACGTGGAGCTCAATGGAAAAGACAGCGACGCGGAAATGGTCCCTCCTTGGGAAGTGACATTGTACCAGAAACTCGATCTGTCAATATCCGACGTGGCAAAAGGTCTATCCGCCGGCAATATCATCGGCCACGGCAGATCCGGTGTCGTTTATAAGGTCACCTTGCCAGCAACGGGATTAACCATTGCAGCTAAAAAGTTCAGGTTATCAGAGAAGTTCTCAGCTTCGTCATTTTCATCGGAGATTGCCACGTTGGCAAGAATCCGCCACCGTAACATTGTGCGGTTATTAGGTTGGGGTGCTAACCGCAGAACGAAGTTACTGTTCTACGATTATTTACCCAATGGTAATTTGGATGCAATGTTGCACGAGGGGTGTACAGGATTAGCAGTGGAATGGGAGACAAGGCTCAAGATAGCAATTGGCGTTGCCGAGGGATTGGCTTATTTGCACCATGATTGCGTTCCTGCTATCTTGCATCGGGATGTTAAGGCGCAGAATATTTTGTTAGGAGATAGATATGAAGCTTGTTTGGCTGATTTTGGTTTTGCTCGTTTCGTCGAAGAACATCCCTCTTCATTTTCAGTTAATCCTCAGTTTGCTGGTTCTTACGGCTACATTGCCCCTGAGTATGCTTGTATGATGAAGATAACAGAGAAAAGTGATGTATACAGCTTCGGTGTGGTCCTACTCGAGATAATAACAGGGAAAAGACCGGTTGATCCATCATTTCCAGATGAAATACATGTTATTCAATGGGTCAGGGAGCATTTGAAGAGCAAGAAAGACCCGGTCGAGATTCTTGATTCGAAGCTACAGGGTCATCCAGATATGCAAATACAAGAGATGTTACAAGCACTTGGTATTTCGTTATTGTGTACAAGTAATCGCGCTGATGATCGGCCTACCATGAAAGATGTCGCTGCATTATTGAGAGAAATTCAGCATGACACTACTTCTGGTGCTGAGCCTCTCAAGCCTAAAAGATCCGAAACATCGTCGTATTCTTCGTCTTCAGTAACCCCCGCTCAGCTGTTGTTTCTACAATCGAACTCACATTCACATTCCTCCTCAATTGCGTATTCCTCTTCCTCGGCCGCAGCAGCATACCATTCACCAAGGAACCAGTCACGAATTCAAGATTGA 3360 0.4387 MPLNPWTLFFLSIFLLLPHHSFLSLAVNQQGEALLSWKRSLNGSLEMLSNWDPIEETPCSWFGVTCNLKNQVVELDMRDVDLLGKLPTNFFSLFSLTSLILTGTNLTGPIPKELGALVELSYLDLSDNALSGEIPSEISYLPKLEELHLNSNELTGSIPVTIGNLTNLTKLILYDNQLSGEIPNTIGNMKSLQVIRAGGNKNLEGQLPQEIGNCSNLIMLGLAETSISGFMPPTIGLLKKLETLAIYTSLLSGQIPSEIGDCTQLQNIYLYENSLTGSIPTKLGNLKNLRNLLLWQNNLVGTIPQEIGNCHQLSVIDASVNSLTGSIPRSFGNLTLLEELQLSANQISGEIPGELGNCQQLTHIELDNNLISGTIPSELGNLGNLTLLFLWHNKLLGNIPSTLSNCQNLEAIDLSQNVLTGPIPEGIFQLQNLNKLLLLSNNLSGKIPSQIGNCSSLIRFRANDNNITGTIPSEIGNLKNLNFLDLGNNRISGVIPAEISGCGNLTFLDLHSNFIAGSLPESLSQLVSLQFLDISDNMLEGSLSQSLGSLAALTKLVLQNNRISGSIPTKLGSCVKLQLLDLSNNQFSGKIPGSIGNIPALEIALNLSTNQLTGNIPREFSDLTKLGVLDLSHNILTGNLDYLATLENLVVLNISSNKFSGRVPNTPFFEKLPLNVLSGNPSLCFAGSRCYNEGAGKSGRRAREARVVMVILLSIACVLLMAALYVVVAAKRRGEQENDVELNGKDSDAEMVPPWEVTLYQKLDLSISDVAKGLSAGNIIGHGRSGVVYKVTLPATGLTIAAKKFRLSEKFSASSFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLDAMLHEGCTGLAVEWETRLKIAIGVAEGLAYLHHDCVPAILHRDVKAQNILLGDRYEACLADFGFARFVEEHPSSFSVNPQFAGSYGYIAPEYACMMKITEKSDVYSFGVVLLEIITGKRPVDPSFPDEIHVIQWVREHLKSKKDPVEILDSKLQGHPDMQIQEMLQALGISLLCTSNRADDRPTMKDVAALLREIQHDTTSGAEPLKPKRSETSSYSSSSVTPAQLLFLQSNSHSHSSSIAYSSSSAAAAYHSPRNQSRIQD 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02139 1119 Pfam Leucine rich repeat 553 612 IPR001611 GO:0005515
Vivi1g02139 1119 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515
Vivi1g02139 1119 Pfam Leucine rich repeat 463 513 IPR001611 GO:0005515
Vivi1g02139 1119 Pfam Leucine rich repeat 288 347 IPR001611 GO:0005515
Vivi1g02139 1119 Gene3D Phosphorylase Kinase; domain 1 747 850 - -
Vivi1g02139 1119 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 201 424 - -
Vivi1g02139 1119 FunFam Putative LRR receptor-like serine/threonine-protein kinase 604 689 - -
Vivi1g02139 1119 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
Vivi1g02139 1119 SUPERFAMILY L domain-like 255 538 - -
Vivi1g02139 1119 Gene3D Ribonuclease Inhibitor 26 200 IPR032675 -
Vivi1g02139 1119 SUPERFAMILY Protein kinase-like (PK-like) 758 1050 IPR011009 -
Vivi1g02139 1119 SUPERFAMILY L domain-like 478 682 - -
Vivi1g02139 1119 Gene3D Ribonuclease Inhibitor 201 434 IPR032675 -
Vivi1g02139 1119 Gene3D Ribonuclease Inhibitor 435 690 IPR032675 -
Vivi1g02139 1119 MobiDBLite consensus disorder prediction 1093 1119 - -
Vivi1g02139 1119 Gene3D Transferase(Phosphotransferase) domain 1 851 1071 - -
Vivi1g02139 1119 SMART LRR_sd22_2 382 411 - -
Vivi1g02139 1119 SMART LRR_sd22_2 478 496 - -
Vivi1g02139 1119 SMART LRR_sd22_2 623 651 - -
Vivi1g02139 1119 SMART LRR_sd22_2 526 552 - -
Vivi1g02139 1119 SMART LRR_sd22_2 262 288 - -
Vivi1g02139 1119 SMART LRR_sd22_2 165 180 - -
Vivi1g02139 1119 SMART LRR_sd22_2 117 143 - -
Vivi1g02139 1119 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 425 519 - -
Vivi1g02139 1119 ProSitePatterns Protein kinases ATP-binding region signature. 780 804 IPR017441 GO:0005524
Vivi1g02139 1119 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Vivi1g02139 1119 SMART serkin_6 774 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02139 1119 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 348 1044 - -
Vivi1g02139 1119 SMART LRR_typ_2 382 406 IPR003591 -
Vivi1g02139 1119 SMART LRR_typ_2 286 310 IPR003591 -
Vivi1g02139 1119 SMART LRR_typ_2 526 549 IPR003591 -
Vivi1g02139 1119 SMART LRR_typ_2 165 189 IPR003591 -
Vivi1g02139 1119 SMART LRR_typ_2 478 502 IPR003591 -
Vivi1g02139 1119 SMART LRR_typ_2 141 164 IPR003591 -
Vivi1g02139 1119 SMART LRR_typ_2 550 574 IPR003591 -
Vivi1g02139 1119 SMART LRR_typ_2 646 679 IPR003591 -
Vivi1g02139 1119 SMART LRR_typ_2 117 140 IPR003591 -
Vivi1g02139 1119 SMART LRR_typ_2 334 358 IPR003591 -
Vivi1g02139 1119 ProSiteProfiles Protein kinase domain profile. 774 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02139 1119 SUPERFAMILY L domain-like 56 305 - -
Vivi1g02139 1119 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 851 1066 - -
Vivi1g02139 1119 MobiDBLite consensus disorder prediction 1056 1075 - -
Vivi1g02139 1119 FunFam LRR receptor-like serine/threonine-protein kinase 524 600 - -
Vivi1g02139 1119 Pfam Protein kinase domain 777 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02139 1119 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 27 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02139 Vivi-Chr1 45167933 45172417 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02139 25 1104 Receptor kinase-like Gene Family AT5G56040 55.280 0.0 1134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi1g02139 Pkinase 2.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02139 - - gmx:100778064 1713.35