Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02136 ATGCCTCTAAATCCATGGACCCTTTTTTCCTTATCCATTTTTCTATTACTTCCACACCATTCTTTTCTATCTTTGGCAGTGAACCAACAAGGAGAAGCTCTTCTTTCATGGAAGAGAAGTTTGAATGGATCCTTGGAGATGTTGAGTAATTGGGATCCAAATGAAGAGACACCGTGTAGTTGGTTTGGAGTGAGTTGCAACTTGAAGAACCAAGTAGTAGAATTGGATCTGAGGGATGTGGATTTGCTTGGAAAACTACCAACAAATTTCATCTCATTGTTTTCCTTGACAAGTCTTATCTTAACCGGAACCAATCTCACCGGTCCAATACCAAAAGAACTAGGTGCTCTGGTTGAACTCAGCTACTTAGACTTGAGTGACAATGCATTGAGCGGCGAAATCCCGAGTGAAATCTGTTATTTGCCTAAACTCGAGGAACTTCATCTGAACTCAAACGAGCTCACGGGGTCGATACCGGTCACAATTGGGAACCTCACAAATTTGACAAAGTTGATCTTATACGACAATCAACTGAGTGGCGAAATTCCCAATACAATTGGCAACATGAAGAGCCTTCAAGTGATAAGAGCTGGTGGAAACAAGAATCTAGAAGGACAATTACCGCAGGAAATTGGAAACTGTTCTAACTTGATCATGTTGGGTTTAGCAGAAACAAGTATCTCAGGTTTCATGCCACCAACTATTGGACTATTGAAGAAGCTTGAAACATTAGCCATTTACACTTCACTTCTCTCTGGCCAAATTCCCTCTGAAATTGGTGATTGCACACAGCTTCAAAACATTTACCTTTACGAAAACTCACTCACAGGATCCATTCCAACTAAACTGGGAAACCTTAAGAATCTCAGAAACCTGTTACTGTGGCAGAACAATTTAGTAGGCACCATTCCCCAAGAGATCGGAAACTGTCACCAATTATCAGTGATCGACGCGTCAGTAAATTCATTAACCGGAAGCATTCCTAAAAGCTTCGGGAACCTGACTTTGCTGGAAGAACTTCAATTGAGTGCGAATCAGATTTCTGGCGAGATACCAGGAGAATTAGGAAACTGTCAACAACTGACTCACATAGAGCTTGATAACAACCTTATAACTGGTACAATACCTTCCGAATTAGGAAACCTTGGGAATCTAACATTGTTGTTTTTGTGGCATAATAAGTTGCAAGGTAATATACCTTCCACTCTTTCCAATTGTCAAAACCTTGAAGCTATTGATCTGTCACAGAATGTGTTAACTGGTCCCATACCAGAAGGTATATTCCAGCTTCAGAATCTCAACAAGCTTTTGCTTCTATCTAATAATCTCTCCGGTAAAATTCCCTCTCAGATTGGAAATTGTACTTCTCTTATTCGCTTTCGAGCCAACGACAACAACATTACTGGTACTATTCCTTCTGAGATTGGTAATCTCAAGAATTTGAACTTCCTTGACCTCGGGAACAATCGAATTTCGGGTGTTATCCCGGCGGAGATCTCTGGCTGCGGCAATCTCACTTTCTTGGACTTGCATTCGAATTTCATTGTCGGAAGCTTGCCAGAAAGTTTAAGTCAGCTTGTTTCACTTCAATTTCTTGATATCTCAGATAACATGCTTGAAGGCTCCCTGAGCCAATCTCTCGGCTCACTCGCCGCACTTACTAAACTGGTTCTTCAGAATAATCGAATCAACGGTTCGATTCCGACTAAACTCGGTTCATGTGTCAAGTTGCAGTTATTGGACCTAAGCAACAATCAATTCTCCGGTAAAATCCCCGGTAGCATTGGTAACATTCCAGCTCTGGAAATAGCTCTGAATCTAAGCACAAACCAACTCACTGGCAACATTCCCCGTGAGTTTTCAGACTTAACAAAACTCGGAGTTCTTGATCTATCTCACAACATTCTCACCGGAAATCTCGATTATCTTGCCACCTTAGAAAATCTTGTGGTCCTCAATATCTCCTCCAATAAATTCTCCGGCCGCGTTCCGAACACGCCGTTCTTCGAGAAACTTCCTTTAAATGTCCTCTCAGGAAACCCGTCGCTGTGCTTCGCTGGCAGCCGGTGCTACAACGAAGGTGCCGGAAAATCAGGTCGCCGTGCGAGGGAAGCGCGCGTGGTGATGGTTATTCTCCTAAGCATCGCGTGTGTTTTACTCATGGCGGCGCTGTACGTTGTCGTGGCAGCAAAACGACGTGGAGAGCAAGAAAACGACGTGGAGCTCAATGGAAAAGACAGCGACGCGGAAATGGTCCCTCCTTGGGAAGTGACATTGTACCAGAAACTCGATCTGTCAATATCCGACGTGGCAAAAGGTCTCTCCGCCGGCAATATCATCGGCCACGGCCGATCTGGCGTCGTTTATAAGGTCACCATGCCAGCAACGGGGTTAACTATCGCAGCGAAAAAGTTCCGGTTAACGGAGAAGTTCTCAGCTTCGTCGTTCTCATCAGAGATTGCCACATTGGCAAGAATCCGGCACCGTAATATTGTGCGGTTATTAGGTTGGGGTGCTAACCGGAGAACAAAGTTACTGTTTTATGATTATTTACCAAACGGTAATTTGGATGCAATGTTGCACGAGGGGTGTACAGGATTAGCAGTGGAATGGGAGACAAGGCTCAAGATAGCAATTGGCGTTGCTGAGGGATTGGCTTATTTGCACCATGATTGCGTTCCTGCTATCTTGCACCGGGATGTTAAGGCGCAGAATATTTTGTTAGGAGATAGATATGAAGCTTGTTTGGCTGATTTTGGTTTCGCTCGTTTCGTCGAAGAACATCCCTCTTCATTTTCAGTTAATCCTCAGTTTGCTGGTTCTTACGGCTACATTGCTCCTGAGTATGCTTGTATGATGAAGATAACAGAGAAAAGTGATGTTTACAGCTTTGGTGTGGTCCTACTCGAGATAATAACAGGGAAAAGACCGGTTGATCCATCATTTCCAGATGAAATACATGTTATTCAATGGGTCAGGGAGCATTTGAAGAGCAAGAAGGACCCGGTCGAGATTCTTGATTCGAGGCTACAGGGTCATCCAGATATGCAAATACAAGAGATGTTACAAGCACTTGGTATTTCGTTATTGTGTACAAGTAATCGCGCTGATGATCGGCCTACCATGAAAGATGTCGCTGCATTATTGAGAGAAATTCAGCATGACACTACTTCTGGTGCTGAGCCTCTCAAGCCTAAAAGATCCGAAACATCGTCGTATTCTTCGTCTTCAGTGACCCCAGCTCAGTTGTTGTTTCTACAATCAAACTCACATTCACATTCCTCCTCAATTGCGTATTCCTCTTCCTCGGCTGCAGCAGCATACCATTCACCAAGGAACCAGTCATGA 3348 0.4376 MPLNPWTLFSLSIFLLLPHHSFLSLAVNQQGEALLSWKRSLNGSLEMLSNWDPNEETPCSWFGVSCNLKNQVVELDLRDVDLLGKLPTNFISLFSLTSLILTGTNLTGPIPKELGALVELSYLDLSDNALSGEIPSEICYLPKLEELHLNSNELTGSIPVTIGNLTNLTKLILYDNQLSGEIPNTIGNMKSLQVIRAGGNKNLEGQLPQEIGNCSNLIMLGLAETSISGFMPPTIGLLKKLETLAIYTSLLSGQIPSEIGDCTQLQNIYLYENSLTGSIPTKLGNLKNLRNLLLWQNNLVGTIPQEIGNCHQLSVIDASVNSLTGSIPKSFGNLTLLEELQLSANQISGEIPGELGNCQQLTHIELDNNLITGTIPSELGNLGNLTLLFLWHNKLQGNIPSTLSNCQNLEAIDLSQNVLTGPIPEGIFQLQNLNKLLLLSNNLSGKIPSQIGNCTSLIRFRANDNNITGTIPSEIGNLKNLNFLDLGNNRISGVIPAEISGCGNLTFLDLHSNFIVGSLPESLSQLVSLQFLDISDNMLEGSLSQSLGSLAALTKLVLQNNRINGSIPTKLGSCVKLQLLDLSNNQFSGKIPGSIGNIPALEIALNLSTNQLTGNIPREFSDLTKLGVLDLSHNILTGNLDYLATLENLVVLNISSNKFSGRVPNTPFFEKLPLNVLSGNPSLCFAGSRCYNEGAGKSGRRAREARVVMVILLSIACVLLMAALYVVVAAKRRGEQENDVELNGKDSDAEMVPPWEVTLYQKLDLSISDVAKGLSAGNIIGHGRSGVVYKVTMPATGLTIAAKKFRLTEKFSASSFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLDAMLHEGCTGLAVEWETRLKIAIGVAEGLAYLHHDCVPAILHRDVKAQNILLGDRYEACLADFGFARFVEEHPSSFSVNPQFAGSYGYIAPEYACMMKITEKSDVYSFGVVLLEIITGKRPVDPSFPDEIHVIQWVREHLKSKKDPVEILDSRLQGHPDMQIQEMLQALGISLLCTSNRADDRPTMKDVAALLREIQHDTTSGAEPLKPKRSETSSYSSSSVTPAQLLFLQSNSHSHSSSIAYSSSSAAAAYHSPRNQS 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02136 1115 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 27 200 - -
Vivi1g02136 1115 MobiDBLite consensus disorder prediction 1093 1115 - -
Vivi1g02136 1115 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
Vivi1g02136 1115 Pfam Leucine Rich Repeat 576 597 IPR001611 GO:0005515
Vivi1g02136 1115 FunFam Leucine-rich repeat receptor protein kinase EMS1 305 402 - -
Vivi1g02136 1115 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 851 1066 - -
Vivi1g02136 1115 FunFam Leucine-rich receptor-like protein kinase family protein 207 304 - -
Vivi1g02136 1115 Gene3D Transferase(Phosphotransferase) domain 1 851 1071 - -
Vivi1g02136 1115 Gene3D Ribonuclease Inhibitor 26 201 IPR032675 -
Vivi1g02136 1115 Gene3D Phosphorylase Kinase; domain 1 747 850 - -
Vivi1g02136 1115 SMART LRR_typ_2 382 406 IPR003591 -
Vivi1g02136 1115 SMART LRR_typ_2 286 310 IPR003591 -
Vivi1g02136 1115 SMART LRR_typ_2 117 139 IPR003591 -
Vivi1g02136 1115 SMART LRR_typ_2 526 549 IPR003591 -
Vivi1g02136 1115 SMART LRR_typ_2 165 189 IPR003591 -
Vivi1g02136 1115 SMART LRR_typ_2 478 502 IPR003591 -
Vivi1g02136 1115 SMART LRR_typ_2 550 574 IPR003591 -
Vivi1g02136 1115 SMART LRR_typ_2 141 164 IPR003591 -
Vivi1g02136 1115 SMART LRR_typ_2 646 679 IPR003591 -
Vivi1g02136 1115 SMART LRR_typ_2 334 358 IPR003591 -
Vivi1g02136 1115 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Vivi1g02136 1115 ProSitePatterns Protein kinases ATP-binding region signature. 780 804 IPR017441 GO:0005524
Vivi1g02136 1115 SMART LRR_sd22_2 478 496 - -
Vivi1g02136 1115 SMART LRR_sd22_2 623 651 - -
Vivi1g02136 1115 SMART LRR_sd22_2 526 552 - -
Vivi1g02136 1115 SMART LRR_sd22_2 117 143 - -
Vivi1g02136 1115 SMART LRR_sd22_2 262 288 - -
Vivi1g02136 1115 SMART LRR_sd22_2 165 180 - -
Vivi1g02136 1115 SMART LRR_sd22_2 382 411 - -
Vivi1g02136 1115 SUPERFAMILY Protein kinase-like (PK-like) 758 1050 IPR011009 -
Vivi1g02136 1115 Gene3D Ribonuclease Inhibitor 424 693 IPR032675 -
Vivi1g02136 1115 Pfam Protein kinase domain 777 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02136 1115 SMART serkin_6 774 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02136 1115 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 296 1048 - -
Vivi1g02136 1115 MobiDBLite consensus disorder prediction 1056 1075 - -
Vivi1g02136 1115 SUPERFAMILY L domain-like 375 687 - -
Vivi1g02136 1115 ProSiteProfiles Protein kinase domain profile. 774 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g02136 1115 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 408 694 - -
Vivi1g02136 1115 Gene3D Ribonuclease Inhibitor 218 325 IPR032675 -
Vivi1g02136 1115 Gene3D Ribonuclease Inhibitor 326 423 IPR032675 -
Vivi1g02136 1115 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515
Vivi1g02136 1115 Pfam Leucine rich repeat 463 513 IPR001611 GO:0005515
Vivi1g02136 1115 SUPERFAMILY L domain-like 55 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02136 Vivi-Chr1 45088979 45093638 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02136 25 1104 Receptor kinase-like Gene Family AT5G56040 55.280 0.0 1135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi1g02136 Pkinase 6.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02136 - - gmx:100778064 1713.74