Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g02113 ATGAATACTCATCTTTCTAATCATAGGGATCGCCGCATCCTATCATTCCCGGCGGTTCATCCTTGCGAAGGAATATCCACCGCAACACTCGTTGCTTCTCTAATCACTCTCTCGCAAACCATATGCAATTTCCAACCTCAAATATTCCCAACACAAAAACGAAACGCAAGAGAAATAATACGTCAAATTTCCATCATTTCAATATTCCTCCACGAAATTCAAGACAGTTGCTCCATAATCCCAAACTCAATTATCATCTCTTTCTCAGAGCTTCACTTCACTTTACAAAAGATTCACTTCTTAATGCAAGATTGTACTCTTGAAGGTGCTAACCTTTTATTGCTCTCGAAATCGAAACAAGTGGCGGAACAATTTTGCTCTCTTATTCGTGCCGTCGCAACATCCCTAGACGTTTTGCCTTTACACAGAATCGAAATTTGCGACGAAGTGAAGGAGTTAGTTGAGATGGTAGCAAAGCAAGCGAGGAAAGCTAAATTTGAAGTGAACCCCAGTGACGAGATTGCGACGAAAAAACTCTATTCAGTTCTTCATCAATTCGAGAGAGGAACAGAGCCAAAACTTCATATCATGCAGGAGATTCTCGATTACTTAAAAATCAAAAACTGGAACGATTGCAACAAAGAAATCAAGTTCATAGAAAACGAGATAAGCTTATTAGAGTATCGTGATTGCAACGAACGTGAACTTCCATTGTTGAGTAGCTTGGTTGGATTTTTAAGCTACTGTAGGGTAGTGATATTCGAATTCGAATCACTGGATCAAAATTCAGATCAATCCGAAGCTCGTATCAGCACCGAGATAATATCTATAACATGTCTGAATCCAGACGATTTCCGATGTCCAATTTCACTCGAATTGATGACAGATCCAGTAACAATTTCAACCGGACAAACCTACGACCGTGCCTCAATTTATAAATGGCTTAAAGCAGGAAACAAAACATGTCCCAAAACAGGAGAAAATCTTAACAGCACAGAGTTAGTCCCAAACACAACGCTAAAGAAGCTTATCCAACAATTTTGCACCGACAACGGAGTTTCATTTTCCAAATCATGTAACCGCAACCGAGATATAACCAAAACAATTTCACCAGGTAGTTCTGCAGCAGCACATGCTATGCAGTTTCTGTCATGGTTTCTCACACGAAGACTCGTGTTCGGAACAGAGAAACAGAAGAACAAAGCAGCTTACGAGATTCGTTTGTTAACTAGGTCGAGTATTTTCAACAGAGCGTGTTTGATTGAAGTTGGAACGGTGCCGCCATTGTTGGAACTTTTAGCCACGGAAGATAAAACGACGCAAGAGAATGCTATCTCTGCTTTGATGAAGCTTTCAAAGCATGGTAACGGGCCTGAGAATATAATGGGCCATAATGGTTTAAAGCCCATTATATCCGTACTTAAAAATGGGCTTAGTCTTGAGGCCCAACAAATTGCAGCAGCTATAATCTTCTATCTTTGTTCAGTGAAAGAATACAGAAAATCAATAGGTGAAAATCAAGACGCGATTCCGTGTTTAGTTGAGTTAGTTAAACAAGGAACAACATGCGGGAAAAAGAACGCTGTTGTTGCGATTTTCGGACTTCTTTTGCTACCGAGGAATCACCAACGCGTGATTGAAGCCGGTGCTGTTCACGCGCTTGTTTCAATTCTACAACCTTCGTATAACTATAAAGAGGAACTTGTTACTGAAGCTTTGGCTGTTATTGCGGCACTTGCTGAGAATTTCGATGGAGCGAACGCTGTGTTGGAAGCTTCGGCGCTAACGTTAATTACTGGGATGTTGCGATCTGCTACTTCGCGTGCTGGGAAGGAACACTGTGCTTCGATTTTGTTGTCCCTTTGTGTTAATGTTGGTGCGGATGTTGTTGGTGTTCTTGCTAAGGATATTACGCTTATGCCCTTGCTTTACTCGCTTCTTACTGATGGTACTGCTCATGCTGCTAAGAAAGCGCGTTTTCTCATTCAGATTCTACAGGACTTCAACGAAACAACAAGTTCTAGATTGAAAGGTTCTTCAATTTTGCGTCAATTGAATGGGTTGGAACTTAGGAATTAG 2079 0.4098 MNTHLSNHRDRRILSFPAVHPCEGISTATLVASLITLSQTICNFQPQIFPTQKRNAREIIRQISIISIFLHEIQDSCSIIPNSIIISFSELHFTLQKIHFLMQDCTLEGANLLLLSKSKQVAEQFCSLIRAVATSLDVLPLHRIEICDEVKELVEMVAKQARKAKFEVNPSDEIATKKLYSVLHQFERGTEPKLHIMQEILDYLKIKNWNDCNKEIKFIENEISLLEYRDCNERELPLLSSLVGFLSYCRVVIFEFESLDQNSDQSEARISTEIISITCLNPDDFRCPISLELMTDPVTISTGQTYDRASIYKWLKAGNKTCPKTGENLNSTELVPNTTLKKLIQQFCTDNGVSFSKSCNRNRDITKTISPGSSAAAHAMQFLSWFLTRRLVFGTEKQKNKAAYEIRLLTRSSIFNRACLIEVGTVPPLLELLATEDKTTQENAISALMKLSKHGNGPENIMGHNGLKPIISVLKNGLSLEAQQIAAAIIFYLCSVKEYRKSIGENQDAIPCLVELVKQGTTCGKKNAVVAIFGLLLLPRNHQRVIEAGAVHALVSILQPSYNYKEELVTEALAVIAALAENFDGANAVLEASALTLITGMLRSATSRAGKEHCASILLSLCVNVGADVVGVLAKDITLMPLLYSLLTDGTAHAAKKARFLIQILQDFNETTSSRLKGSSILRQLNGLELRN 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g02113 692 SUPERFAMILY RING/U-box 282 355 - -
Vivi1g02113 692 Pfam Armadillo/beta-catenin-like repeat 416 448 IPR000225 GO:0005515
Vivi1g02113 692 Pfam U-box domain 282 351 IPR003613 GO:0004842|GO:0016567
Vivi1g02113 692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 355 IPR013083 -
Vivi1g02113 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 549 594 IPR000225 GO:0005515
Vivi1g02113 692 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Vivi1g02113 692 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Vivi1g02113 692 PANTHER U BOX DOMAIN-CONTAINING 55 665 - -
Vivi1g02113 692 CDD RING-Ubox_PUB 282 334 IPR045210 -
Vivi1g02113 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 424 466 IPR000225 GO:0005515
Vivi1g02113 692 SMART arm_5 455 495 IPR000225 GO:0005515
Vivi1g02113 692 SMART arm_5 538 581 IPR000225 GO:0005515
Vivi1g02113 692 SMART arm_5 412 453 IPR000225 GO:0005515
Vivi1g02113 692 FunFam RING-type E3 ubiquitin transferase 361 676 - -
Vivi1g02113 692 FunFam RING-type E3 ubiquitin transferase 280 355 - -
Vivi1g02113 692 Gene3D - 373 688 IPR011989 -
Vivi1g02113 692 SUPERFAMILY ARM repeat 394 666 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g02113 Vivi-Chr1 44668097 44670601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g02113 4 670 U-box Gene Family AT1G60190 39.882 1.32e-163 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g02113 - - tpra:123884536 1086.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g02113 1 44668097 44670601 Vivi1g02113 1 44668097 44670601 ECH